Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BPN entry

There are 2 chains in PDB entry 9BPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 321ASN 464
B
 MET 319VAL 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9BPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
333 339Right-handed alpha
Helix 2
AA2
A
339 346Right-handed alpha
Helix 3
AA3
A
362 366Right-handed 310
Helix 4
AA4
A
383 400Right-handed alpha
Helix 5
AA5
A
413 426Right-handed alpha
Helix 6
AA6
A
430 442Right-handed alpha
Helix 7
AA7
A
448 463Right-handed alpha
Helix 8
AA8
B
333 339Right-handed alpha
Helix 9
AA9
B
339 346Right-handed alpha
Helix 10
AB1
B
362 366Right-handed 310
Helix 11
AB2
B
383 401Right-handed alpha
Helix 12
AB3
B
413 427Right-handed alpha
Helix 13
AB4
B
430 442Right-handed alpha
Helix 14
AB5
B
448 465Right-handed alpha
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There are 2 sheets in PDB entry 9BPN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
330 332anti-parallel
Strand 3
A
403 407parallel
Strand 4
A
348 353parallel
Strand 5
A
369 372parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 326first strand
Strand 2
B
329 332anti-parallel
Strand 3
B
403 407parallel
Strand 4
B
348 353parallel
Strand 5
B
369 372parallel
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