Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BPV entry

There are 3 chains in PDB entry 9BPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 20HIS 214
B
 PRO 6GLU 201
C
 CYS 4VAL 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9BPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 111Right-handed alpha
Helix 2
AA2
A
144 149Right-handed alpha
Helix 3
AA3
B
98 103Right-handed alpha
Helix 4
AA4
C
5 11Right-handed 310
Helix 5
AA5
C
13 34Right-handed alpha
Helix 6
AA6
C
48 52Right-handed 310
Helix 7
AA7
C
55 79Right-handed alpha
Helix 8
AA8
C
79 102Right-handed alpha
Helix 9
AA9
C
116 128Right-handed alpha
Helix 10
AB1
C
133 144Right-handed alpha
Helix 11
AB2
C
144 151Right-handed alpha
Helix 12
AB3
C
151 159Right-handed alpha
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There are 10 sheets in PDB entry 9BPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 32first strand
Strand 2
A
35 41anti-parallel
Strand 3
A
73 75anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 69first strand
Strand 2
A
51 58anti-parallel
Strand 3
A
85 93anti-parallel
Strand 4
A
96 97anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 69first strand
Strand 2
A
51 58anti-parallel
Strand 3
A
85 93anti-parallel
Strand 4
A
101 105anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 123first strand
Strand 2
A
126 132anti-parallel
Strand 3
A
175 178anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
153 160anti-parallel
Strand 3
A
185 194anti-parallel
Strand 4
A
208 212anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 15first strand
Strand 2
B
18 22anti-parallel
Strand 3
B
61 63anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 41first strand
Strand 2
B
76 82anti-parallel
Strand 3
B
92 93anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 115first strand
Strand 2
B
118 124anti-parallel
Strand 3
B
162 165anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
136 144anti-parallel
Strand 3
B
156 157anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
136 144anti-parallel
Strand 3
B
174 183anti-parallel
Strand 4
B
187 189anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il