Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BPW entry

There are 3 chains in PDB entry 9BPW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 461
B	MET 1	HIS 461
C	MET 1	PHE 347

There are 84 helices in PDB entry 9BPW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	32	Right-handed alpha
Helix 2	AA2	A	40	61	Right-handed alpha
Helix 3	AA3	A	65	81	Right-handed alpha
Helix 4	AA4	A	84	88	Right-handed 310
Helix 5	AA5	A	98	120	Right-handed alpha
Helix 6	AA6	A	137	157	Right-handed alpha
Helix 7	AA7	A	157	176	Right-handed alpha
Helix 8	AA8	A	195	218	Right-handed alpha
Helix 9	AA9	A	239	253	Right-handed alpha
Helix 10	AB1	A	261	268	Right-handed alpha
Helix 11	AB2	A	269	297	Right-handed alpha
Helix 12	AB3	A	325	349	Right-handed alpha
Helix 13	AB4	A	359	385	Right-handed alpha
Helix 14	AB5	A	386	389	Right-handed 310
Helix 15	AB6	A	392	403	Right-handed alpha
Helix 16	AB7	A	406	409	Right-handed 310
Helix 17	AB8	A	410	415	Right-handed alpha
Helix 18	AB9	A	415	430	Right-handed alpha
Helix 19	AC1	A	432	440	Right-handed alpha
Helix 20	AC2	A	444	452	Right-handed alpha
Helix 21	AC3	A	453	457	Right-handed 310
Helix 22	AC4	B	22	32	Right-handed alpha
Helix 23	AC5	B	40	61	Right-handed alpha
Helix 24	AC6	B	65	81	Right-handed alpha
Helix 25	AC7	B	84	88	Right-handed 310
Helix 26	AC8	B	98	120	Right-handed alpha
Helix 27	AC9	B	137	157	Right-handed alpha
Helix 28	AD1	B	157	176	Right-handed alpha
Helix 29	AD2	B	195	218	Right-handed alpha
Helix 30	AD3	B	239	253	Right-handed alpha
Helix 31	AD4	B	261	268	Right-handed alpha
Helix 32	AD5	B	269	297	Right-handed alpha
Helix 33	AD6	B	325	350	Right-handed alpha
Helix 34	AD7	B	359	385	Right-handed alpha
Helix 35	AD8	B	386	389	Right-handed 310
Helix 36	AD9	B	392	403	Right-handed alpha
Helix 37	AE1	B	406	409	Right-handed 310
Helix 38	AE2	B	410	415	Right-handed alpha
Helix 39	AE3	B	415	429	Right-handed alpha
Helix 40	AE4	B	432	440	Right-handed alpha
Helix 41	AE5	B	444	452	Right-handed alpha
Helix 42	AE6	B	453	457	Right-handed 310
Helix 43	AE7	C	22	32	Right-handed alpha
Helix 44	AE8	C	40	61	Right-handed alpha
Helix 45	AE9	C	65	81	Right-handed alpha
Helix 46	AF1	C	84	88	Right-handed 310
Helix 47	AF2	C	98	120	Right-handed alpha
Helix 48	AF3	C	137	157	Right-handed alpha
Helix 49	AF4	C	157	176	Right-handed alpha
Helix 50	AF5	C	195	220	Right-handed alpha
Helix 51	AF6	C	239	253	Right-handed alpha
Helix 52	AF7	C	261	268	Right-handed alpha
Helix 53	AF8	C	269	297	Right-handed alpha
Helix 54	AF9	C	325	349	Right-handed alpha
Helix 55	AG1	C	359	385	Right-handed alpha
Helix 56	AG2	C	386	389	Right-handed 310
Helix 57	AG3	C	392	403	Right-handed alpha
Helix 58	AG4	C	406	409	Right-handed 310
Helix 59	AG5	C	410	415	Right-handed alpha
Helix 60	AG6	C	415	430	Right-handed alpha
Helix 61	AG7	C	432	440	Right-handed alpha
Helix 62	AG8	C	444	452	Right-handed alpha
Helix 63	AG9	C	453	457	Right-handed 310
Helix 64	AH1	D	22	32	Right-handed alpha
Helix 65	AH2	D	40	61	Right-handed alpha
Helix 66	AH3	D	65	81	Right-handed alpha
Helix 67	AH4	D	84	88	Right-handed 310
Helix 68	AH5	D	98	120	Right-handed alpha
Helix 69	AH6	D	140	157	Right-handed alpha
Helix 70	AH7	D	157	176	Right-handed alpha
Helix 71	AH8	D	195	219	Right-handed alpha
Helix 72	AH9	D	239	253	Right-handed alpha
Helix 73	AI1	D	261	268	Right-handed alpha
Helix 74	AI2	D	269	297	Right-handed alpha
Helix 75	AI3	D	325	349	Right-handed alpha
Helix 76	AI4	D	359	385	Right-handed alpha
Helix 77	AI5	D	386	389	Right-handed 310
Helix 78	AI6	D	392	403	Right-handed alpha
Helix 79	AI7	D	406	409	Right-handed 310
Helix 80	AI8	D	410	415	Right-handed alpha
Helix 81	AI9	D	415	430	Right-handed alpha
Helix 82	AJ1	D	432	440	Right-handed alpha
Helix 83	AJ2	D	444	452	Right-handed alpha
Helix 84	AJ3	D	453	457	Right-handed 310

There are 16 sheets in PDB entry 9BPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	8	first strand
Strand 2	A	11	16	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	185	first strand
Strand 2	A	188	194	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	257	258	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	390	391	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	8	first strand
Strand 2	B	11	16	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	185	first strand
Strand 2	B	188	194	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	223	first strand
Strand 2	B	257	258	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	390	391	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	8	first strand
Strand 2	C	11	16	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	185	first strand
Strand 2	C	188	194	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	223	first strand
Strand 2	C	257	258	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	308	first strand
Strand 2	C	390	391	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	8	first strand
Strand 2	D	11	16	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	185	first strand
Strand 2	D	188	194	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	223	first strand
Strand 2	D	257	258	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	308	first strand
Strand 2	D	390	391	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BPW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPW