Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BPY entry

There are 4 chains in PDB entry 9BPY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 765	LYS 1010
B	SER 765	LYS 1010
C	LEU 767	LYS 1010
D	SER 765	THR 1011

There are 38 helices in PDB entry 9BPY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	768	779	Right-handed alpha
Helix 2	AA2	A	790	798	Right-handed alpha
Helix 3	AA3	A	808	821	Right-handed alpha
Helix 4	AA4	A	843	848	Right-handed alpha
Helix 5	AA5	A	848	853	Right-handed alpha
Helix 6	AA6	A	868	876	Right-handed alpha
Helix 7	AA7	A	900	906	Right-handed alpha
Helix 8	AA8	A	958	961	Right-handed 310
Helix 9	AA9	A	993	995	Right-handed 310
Helix 10	AB1	B	768	779	Right-handed alpha
Helix 11	AB2	B	790	798	Right-handed alpha
Helix 12	AB3	B	808	821	Right-handed alpha
Helix 13	AB4	B	823	827	Right-handed 310
Helix 14	AB5	B	843	848	Right-handed alpha
Helix 15	AB6	B	848	853	Right-handed alpha
Helix 16	AB7	B	868	876	Right-handed alpha
Helix 17	AB8	B	900	906	Right-handed alpha
Helix 18	AB9	B	958	961	Right-handed 310
Helix 19	AC1	B	993	995	Right-handed 310
Helix 20	AC2	C	768	779	Right-handed alpha
Helix 21	AC3	C	790	798	Right-handed alpha
Helix 22	AC4	C	808	821	Right-handed alpha
Helix 23	AC5	C	823	827	Right-handed 310
Helix 24	AC6	C	843	848	Right-handed alpha
Helix 25	AC7	C	848	853	Right-handed alpha
Helix 26	AC8	C	868	876	Right-handed alpha
Helix 27	AC9	C	900	906	Right-handed alpha
Helix 28	AD1	C	958	961	Right-handed 310
Helix 29	AD2	C	993	995	Right-handed 310
Helix 30	AD3	D	768	779	Right-handed alpha
Helix 31	AD4	D	790	798	Right-handed alpha
Helix 32	AD5	D	808	821	Right-handed alpha
Helix 33	AD6	D	843	848	Right-handed alpha
Helix 34	AD7	D	848	853	Right-handed alpha
Helix 35	AD8	D	868	876	Right-handed alpha
Helix 36	AD9	D	900	906	Right-handed alpha
Helix 37	AE1	D	958	961	Right-handed 310
Helix 38	AE2	D	993	995	Right-handed 310

There are 16 sheets in PDB entry 9BPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	829	838	first strand
Strand 2	A	997	1009	anti-parallel
Strand 3	A	916	925	anti-parallel
Strand 4	A	857	864	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	895	897	first strand
Strand 2	A	988	991	anti-parallel
Strand 3	A	947	950	anti-parallel
Strand 4	A	929	932	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	974	976	first strand
Strand 2	A	952	956	anti-parallel
Strand 3	A	984	986	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	962	964	first strand
Strand 2	A	967	969	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	802	803	first strand
Strand 2	B	829	838	anti-parallel
Strand 3	B	997	1009	anti-parallel
Strand 4	B	916	925	anti-parallel
Strand 5	B	857	864	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	895	897	first strand
Strand 2	B	988	991	anti-parallel
Strand 3	B	947	950	anti-parallel
Strand 4	B	929	932	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	974	976	first strand
Strand 2	B	952	956	anti-parallel
Strand 3	B	984	986	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	962	964	first strand
Strand 2	B	967	969	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	829	838	first strand
Strand 2	C	997	1009	anti-parallel
Strand 3	C	916	925	anti-parallel
Strand 4	C	857	864	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	895	897	first strand
Strand 2	C	988	991	anti-parallel
Strand 3	C	947	950	anti-parallel
Strand 4	C	929	932	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	974	976	first strand
Strand 2	C	952	956	anti-parallel
Strand 3	C	984	986	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	962	964	first strand
Strand 2	C	967	969	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	802	803	first strand
Strand 2	D	829	838	anti-parallel
Strand 3	D	997	1009	anti-parallel
Strand 4	D	916	925	anti-parallel
Strand 5	D	857	864	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	895	897	first strand
Strand 2	D	988	991	anti-parallel
Strand 3	D	947	950	anti-parallel
Strand 4	D	929	932	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	974	976	first strand
Strand 2	D	952	956	anti-parallel
Strand 3	D	984	986	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	962	964	first strand
Strand 2	D	967	969	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BPY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BPY