Analysis of interatomic Contacts of Structural Units in PDB entry:
9BQ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BQ0 entry

There are 4 chains in PDB entry 9BQ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 522
B	MET 1	PRO 519
C	MET 1	VAL 521
D	MET 1	VAL 521

There are 72 helices in PDB entry 9BQ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	13	Right-handed alpha
Helix 2	AA2	A	21	26	Right-handed alpha
Helix 3	AA3	A	27	30	Right-handed 310
Helix 4	AA4	A	57	75	Right-handed alpha
Helix 5	AA5	A	88	102	Right-handed alpha
Helix 6	AA6	A	114	126	Right-handed alpha
Helix 7	AA7	A	133	141	Right-handed alpha
Helix 8	AA8	A	142	146	Right-handed 310
Helix 9	AA9	A	157	159	Right-handed 310
Helix 10	AB1	A	162	167	Right-handed 310
Helix 11	AB2	A	201	213	Right-handed alpha
Helix 12	AB3	A	230	244	Right-handed alpha
Helix 13	AB4	A	254	266	Right-handed alpha
Helix 14	AB5	A	273	282	Right-handed alpha
Helix 15	AB6	A	308	314	Right-handed alpha
Helix 16	AB7	A	404	411	Right-handed alpha
Helix 17	AB8	A	449	456	Right-handed alpha
Helix 18	AB9	A	511	516	Right-handed alpha
Helix 19	AC1	B	4	13	Right-handed alpha
Helix 20	AC2	B	21	29	Right-handed alpha
Helix 21	AC3	B	57	75	Right-handed alpha
Helix 22	AC4	B	88	102	Right-handed alpha
Helix 23	AC5	B	114	124	Right-handed alpha
Helix 24	AC6	B	133	141	Right-handed alpha
Helix 25	AC7	B	142	146	Right-handed 310
Helix 26	AC8	B	157	159	Right-handed 310
Helix 27	AC9	B	162	167	Right-handed 310
Helix 28	AD1	B	201	213	Right-handed alpha
Helix 29	AD2	B	230	244	Right-handed alpha
Helix 30	AD3	B	254	266	Right-handed alpha
Helix 31	AD4	B	273	282	Right-handed alpha
Helix 32	AD5	B	309	314	Right-handed alpha
Helix 33	AD6	B	404	410	Right-handed alpha
Helix 34	AD7	B	438	440	Right-handed 310
Helix 35	AD8	B	449	458	Right-handed alpha
Helix 36	AD9	B	511	517	Right-handed alpha
Helix 37	AE1	C	4	13	Right-handed alpha
Helix 38	AE2	C	18	20	Right-handed 310
Helix 39	AE3	C	21	30	Right-handed alpha
Helix 40	AE4	C	57	75	Right-handed alpha
Helix 41	AE5	C	88	102	Right-handed alpha
Helix 42	AE6	C	114	126	Right-handed alpha
Helix 43	AE7	C	133	141	Right-handed alpha
Helix 44	AE8	C	142	146	Right-handed 310
Helix 45	AE9	C	157	159	Right-handed 310
Helix 46	AF1	C	162	167	Right-handed 310
Helix 47	AF2	C	204	214	Right-handed alpha
Helix 48	AF3	C	230	244	Right-handed alpha
Helix 49	AF4	C	254	265	Right-handed alpha
Helix 50	AF5	C	273	283	Right-handed alpha
Helix 51	AF6	C	408	410	Right-handed 310
Helix 52	AF7	C	449	461	Right-handed alpha
Helix 53	AF8	C	506	517	Right-handed alpha
Helix 54	AF9	D	4	13	Right-handed alpha
Helix 55	AG1	D	18	20	Right-handed 310
Helix 56	AG2	D	21	29	Right-handed alpha
Helix 57	AG3	D	57	75	Right-handed alpha
Helix 58	AG4	D	88	102	Right-handed alpha
Helix 59	AG5	D	114	126	Right-handed alpha
Helix 60	AG6	D	133	141	Right-handed alpha
Helix 61	AG7	D	142	146	Right-handed 310
Helix 62	AG8	D	157	159	Right-handed 310
Helix 63	AG9	D	162	167	Right-handed 310
Helix 64	AH1	D	201	213	Right-handed alpha
Helix 65	AH2	D	230	244	Right-handed alpha
Helix 66	AH3	D	256	266	Right-handed alpha
Helix 67	AH4	D	273	283	Right-handed alpha
Helix 68	AH5	D	311	314	Right-handed 310
Helix 69	AH6	D	404	411	Right-handed alpha
Helix 70	AH7	D	438	440	Right-handed 310
Helix 71	AH8	D	449	461	Right-handed alpha
Helix 72	AH9	D	506	517	Right-handed alpha

There are 22 sheets in PDB entry 9BQ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	36	39	anti-parallel
Strand 3	A	247	249	parallel
Strand 4	A	222	224	parallel
Strand 5	A	269	271	parallel
Strand 6	A	295	298	parallel
Strand 7	A	333	336	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	155	first strand
Strand 2	A	129	132	parallel
Strand 3	A	81	86	parallel
Strand 4	A	105	110	parallel
Strand 5	A	180	185	parallel
Strand 6	A	195	199	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	320	first strand
Strand 2	A	326	330	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	361	366	anti-parallel
Strand 3	A	431	436	anti-parallel
Strand 4	A	416	425	anti-parallel
Strand 5	A	388	393	anti-parallel
Strand 6	A	371	375	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	361	366	anti-parallel
Strand 3	A	431	436	anti-parallel
Strand 4	A	416	425	anti-parallel
Strand 5	A	412	413	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	443	first strand
Strand 2	A	446	448	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	469	first strand
Strand 2	A	491	493	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	56	first strand
Strand 2	B	36	39	anti-parallel
Strand 3	B	247	249	parallel
Strand 4	B	222	225	parallel
Strand 5	B	269	272	parallel
Strand 6	B	295	297	parallel
Strand 7	B	333	335	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	129	132	parallel
Strand 3	B	81	86	parallel
Strand 4	B	105	110	parallel
Strand 5	B	180	185	parallel
Strand 6	B	195	199	anti-parallel
Strand 7	B	400	401	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	320	first strand
Strand 2	B	326	330	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	361	366	anti-parallel
Strand 3	B	431	436	anti-parallel
Strand 4	B	416	425	anti-parallel
Strand 5	B	388	394	anti-parallel
Strand 6	B	370	375	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	361	366	anti-parallel
Strand 3	B	431	436	anti-parallel
Strand 4	B	416	425	anti-parallel
Strand 5	B	412	413	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	443	first strand
Strand 2	B	446	448	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	470	first strand
Strand 2	B	490	492	anti-parallel

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There are 13 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	56	first strand
Strand 2	C	36	39	anti-parallel
Strand 3	C	247	249	parallel
Strand 4	C	222	224	parallel
Strand 5	C	269	271	parallel
Strand 6	C	295	298	parallel
Strand 7	C	333	339	parallel
Strand 8	C	346	350	anti-parallel
Strand 9	C	362	366	anti-parallel
Strand 10	C	431	436	anti-parallel
Strand 11	C	416	425	anti-parallel
Strand 12	C	388	393	anti-parallel
Strand 13	C	371	375	anti-parallel

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There are 12 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	56	first strand
Strand 2	C	36	39	anti-parallel
Strand 3	C	247	249	parallel
Strand 4	C	222	224	parallel
Strand 5	C	269	271	parallel
Strand 6	C	295	298	parallel
Strand 7	C	333	339	parallel
Strand 8	C	346	350	anti-parallel
Strand 9	C	362	366	anti-parallel
Strand 10	C	431	436	anti-parallel
Strand 11	C	416	425	anti-parallel
Strand 12	C	412	413	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	129	132	parallel
Strand 3	C	81	86	parallel
Strand 4	C	105	110	parallel
Strand 5	C	180	185	parallel
Strand 6	C	195	199	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	320	first strand
Strand 2	C	326	330	anti-parallel

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There are 13 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	56	first strand
Strand 2	D	36	39	anti-parallel
Strand 3	D	247	249	parallel
Strand 4	D	222	225	parallel
Strand 5	D	269	272	parallel
Strand 6	D	295	298	parallel
Strand 7	D	333	339	parallel
Strand 8	D	346	349	anti-parallel
Strand 9	D	361	366	anti-parallel
Strand 10	D	431	436	anti-parallel
Strand 11	D	416	425	anti-parallel
Strand 12	D	388	393	anti-parallel
Strand 13	D	371	375	anti-parallel

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There are 12 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	56	first strand
Strand 2	D	36	39	anti-parallel
Strand 3	D	247	249	parallel
Strand 4	D	222	225	parallel
Strand 5	D	269	272	parallel
Strand 6	D	295	298	parallel
Strand 7	D	333	339	parallel
Strand 8	D	346	349	anti-parallel
Strand 9	D	361	366	anti-parallel
Strand 10	D	431	436	anti-parallel
Strand 11	D	416	425	anti-parallel
Strand 12	D	412	413	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	155	first strand
Strand 2	D	129	132	parallel
Strand 3	D	81	86	parallel
Strand 4	D	105	110	parallel
Strand 5	D	180	185	parallel
Strand 6	D	195	199	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	320	first strand
Strand 2	D	326	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BQ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BQ0