Analysis of interatomic Contacts of Structural Units in PDB entry:
9BQI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BQI entry

There are 3 chains in PDB entry 9BQI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	GLU 376
C	GLY 3	GLU 376
B	GLY 3	GLU 376

There are 33 helices in PDB entry 9BQI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	13	Right-handed alpha
Helix 2	AA2	A	25	46	Right-handed alpha
Helix 3	AA3	A	85	90	Right-handed alpha
Helix 4	AA4	A	179	184	Right-handed 310
Helix 5	AA5	A	210	215	Right-handed alpha
Helix 6	AA6	A	232	239	Right-handed alpha
Helix 7	AA7	A	242	248	Right-handed alpha
Helix 8	AA8	A	266	270	Right-handed 310
Helix 9	AA9	A	331	346	Right-handed alpha
Helix 10	AB1	A	346	360	Right-handed alpha
Helix 11	AB2	A	363	371	Right-handed alpha
Helix 12	AB3	C	4	13	Right-handed alpha
Helix 13	AB4	C	25	46	Right-handed alpha
Helix 14	AB5	C	85	90	Right-handed alpha
Helix 15	AB6	C	179	184	Right-handed 310
Helix 16	AB7	C	210	215	Right-handed alpha
Helix 17	AB8	C	232	239	Right-handed alpha
Helix 18	AB9	C	242	248	Right-handed alpha
Helix 19	AC1	C	266	270	Right-handed 310
Helix 20	AC2	C	331	346	Right-handed alpha
Helix 21	AC3	C	346	360	Right-handed alpha
Helix 22	AC4	C	363	371	Right-handed alpha
Helix 23	AC5	B	4	13	Right-handed alpha
Helix 24	AC6	B	25	46	Right-handed alpha
Helix 25	AC7	B	85	90	Right-handed alpha
Helix 26	AC8	B	179	184	Right-handed 310
Helix 27	AC9	B	210	215	Right-handed alpha
Helix 28	AD1	B	232	239	Right-handed alpha
Helix 29	AD2	B	242	248	Right-handed alpha
Helix 30	AD3	B	266	270	Right-handed 310
Helix 31	AD4	B	331	346	Right-handed alpha
Helix 32	AD5	B	346	360	Right-handed alpha
Helix 33	AD6	B	363	371	Right-handed alpha

There are 21 sheets in PDB entry 9BQI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	18	first strand
Strand 2	B	20	24	anti-parallel
Strand 3	C	372	375	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	18	first strand
Strand 2	A	20	24	anti-parallel
Strand 3	B	372	375	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	59	first strand
Strand 2	A	326	330	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	69	first strand
Strand 2	A	186	195	anti-parallel
Strand 3	A	200	203	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	69	first strand
Strand 2	A	186	195	anti-parallel
Strand 3	A	229	231	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	76	first strand
Strand 2	A	80	84	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	151	first strand
Strand 2	A	157	165	anti-parallel
Strand 3	A	98	117	anti-parallel
Strand 4	A	307	324	anti-parallel
Strand 5	A	251	258	parallel
Strand 6	A	273	278	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	151	first strand
Strand 2	A	157	165	anti-parallel
Strand 3	A	98	117	anti-parallel
Strand 4	A	307	324	anti-parallel
Strand 5	A	293	301	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	375	first strand
Strand 2	C	20	24	parallel
Strand 3	B	14	18	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	59	first strand
Strand 2	C	326	330	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	69	first strand
Strand 2	C	186	195	anti-parallel
Strand 3	C	200	203	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	69	first strand
Strand 2	C	186	195	anti-parallel
Strand 3	C	229	231	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	76	first strand
Strand 2	C	80	84	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	151	first strand
Strand 2	C	157	165	anti-parallel
Strand 3	C	98	117	anti-parallel
Strand 4	C	307	324	anti-parallel
Strand 5	C	251	258	parallel
Strand 6	C	273	278	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	151	first strand
Strand 2	C	157	165	anti-parallel
Strand 3	C	98	117	anti-parallel
Strand 4	C	307	324	anti-parallel
Strand 5	C	293	301	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	59	first strand
Strand 2	B	326	330	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	69	first strand
Strand 2	B	186	195	anti-parallel
Strand 3	B	200	203	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	69	first strand
Strand 2	B	186	195	anti-parallel
Strand 3	B	229	231	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	76	first strand
Strand 2	B	80	84	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	151	first strand
Strand 2	B	157	165	anti-parallel
Strand 3	B	98	117	anti-parallel
Strand 4	B	307	324	anti-parallel
Strand 5	B	251	258	parallel
Strand 6	B	273	278	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	151	first strand
Strand 2	B	157	165	anti-parallel
Strand 3	B	98	117	anti-parallel
Strand 4	B	307	324	anti-parallel
Strand 5	B	293	301	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BQI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BQI