Analysis of interatomic Contacts of Structural Units in PDB entry:
9BQV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BQV entry

There are 2 chains in PDB entry 9BQV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 1190
F	MET 1	SER 1190

There are105 helices in PDB entry 9BQV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed 310
Helix 2	AA2	A	20	35	Right-handed alpha
Helix 3	AA3	A	54	78	Right-handed alpha
Helix 4	AA4	A	94	112	Right-handed alpha
Helix 5	AA5	A	121	131	Right-handed alpha
Helix 6	AA6	A	137	143	Right-handed alpha
Helix 7	AA7	A	146	157	Right-handed alpha
Helix 8	AA8	A	158	162	Right-handed 310
Helix 9	AA9	A	163	177	Right-handed alpha
Helix 10	AB1	A	181	208	Right-handed alpha
Helix 11	AB2	A	216	227	Right-handed alpha
Helix 12	AB3	A	229	234	Right-handed alpha
Helix 13	AB4	A	243	250	Right-handed alpha
Helix 14	AB5	A	259	263	Right-handed 310
Helix 15	AB6	A	276	286	Right-handed alpha
Helix 16	AB7	A	293	305	Right-handed alpha
Helix 17	AB8	A	317	321	Right-handed 310
Helix 18	AB9	A	322	336	Right-handed alpha
Helix 19	AC1	A	401	433	Right-handed alpha
Helix 20	AC2	A	444	460	Right-handed alpha
Helix 21	AC3	A	461	463	Right-handed 310
Helix 22	AC4	A	464	472	Right-handed alpha
Helix 23	AC5	A	524	535	Right-handed alpha
Helix 24	AC6	A	556	564	Right-handed alpha
Helix 25	AC7	A	572	587	Right-handed alpha
Helix 26	AC8	A	604	616	Right-handed alpha
Helix 27	AC9	A	621	629	Right-handed alpha
Helix 28	AD1	A	636	656	Right-handed alpha
Helix 29	AD2	A	672	674	Right-handed 310
Helix 30	AD3	A	675	693	Right-handed alpha
Helix 31	AD4	A	704	711	Right-handed alpha
Helix 32	AD5	A	712	723	Right-handed alpha
Helix 33	AD6	A	733	737	Right-handed alpha
Helix 34	AD7	A	747	752	Right-handed alpha
Helix 35	AD8	A	760	764	Right-handed 310
Helix 36	AD9	A	789	807	Right-handed alpha
Helix 37	AE1	A	811	824	Right-handed alpha
Helix 38	AE2	A	827	836	Right-handed alpha
Helix 39	AE3	A	838	853	Right-handed alpha
Helix 40	AE4	A	854	858	Right-handed 310
Helix 41	AE5	A	873	879	Right-handed alpha
Helix 42	AE6	A	884	888	Right-handed 310
Helix 43	AE7	A	889	901	Right-handed alpha
Helix 44	AE8	A	909	938	Right-handed alpha
Helix 45	AE9	A	943	960	Right-handed alpha
Helix 46	AF1	A	1014	1019	Right-handed alpha
Helix 47	AF2	A	1023	1032	Right-handed alpha
Helix 48	AF3	A	1045	1052	Right-handed alpha
Helix 49	AF4	A	1052	1068	Right-handed alpha
Helix 50	AF5	A	1077	1081	Right-handed 310
Helix 51	AF6	A	1117	1127	Right-handed alpha
Helix 52	AF7	A	1176	1189	Right-handed alpha
Helix 53	AF8	F	4	9	Right-handed 310
Helix 54	AF9	F	20	38	Right-handed alpha
Helix 55	AG1	F	54	78	Right-handed alpha
Helix 56	AG2	F	94	111	Right-handed alpha
Helix 57	AG3	F	121	131	Right-handed alpha
Helix 58	AG4	F	137	143	Right-handed alpha
Helix 59	AG5	F	146	157	Right-handed alpha
Helix 60	AG6	F	158	162	Right-handed 310
Helix 61	AG7	F	163	177	Right-handed alpha
Helix 62	AG8	F	181	209	Right-handed alpha
Helix 63	AG9	F	216	227	Right-handed alpha
Helix 64	AH1	F	229	234	Right-handed alpha
Helix 65	AH2	F	243	250	Right-handed alpha
Helix 66	AH3	F	259	263	Right-handed 310
Helix 67	AH4	F	276	286	Right-handed alpha
Helix 68	AH5	F	293	305	Right-handed alpha
Helix 69	AH6	F	322	336	Right-handed alpha
Helix 70	AH7	F	401	433	Right-handed alpha
Helix 71	AH8	F	447	460	Right-handed alpha
Helix 72	AH9	F	461	463	Right-handed 310
Helix 73	AI1	F	464	472	Right-handed alpha
Helix 74	AI2	F	493	497	Right-handed 310
Helix 75	AI3	F	524	536	Right-handed alpha
Helix 76	AI4	F	556	565	Right-handed alpha
Helix 77	AI5	F	572	585	Right-handed alpha
Helix 78	AI6	F	604	616	Right-handed alpha
Helix 79	AI7	F	621	629	Right-handed alpha
Helix 80	AI8	F	636	656	Right-handed alpha
Helix 81	AI9	F	672	674	Right-handed 310
Helix 82	AJ1	F	675	693	Right-handed alpha
Helix 83	AJ2	F	704	711	Right-handed alpha
Helix 84	AJ3	F	712	723	Right-handed alpha
Helix 85	AJ4	F	734	739	Right-handed 310
Helix 86	AJ5	F	747	752	Right-handed alpha
Helix 87	AJ6	F	760	764	Right-handed 310
Helix 88	AJ7	F	789	807	Right-handed alpha
Helix 89	AJ8	F	811	824	Right-handed alpha
Helix 90	AJ9	F	827	836	Right-handed alpha
Helix 91	AK1	F	838	853	Right-handed alpha
Helix 92	AK2	F	854	858	Right-handed 310
Helix 93	AK3	F	873	880	Right-handed alpha
Helix 94	AK4	F	884	888	Right-handed 310
Helix 95	AK5	F	889	901	Right-handed alpha
Helix 96	AK6	F	909	938	Right-handed alpha
Helix 97	AK7	F	943	960	Right-handed alpha
Helix 98	AK8	F	992	996	Right-handed 310
Helix 99	AK9	F	1014	1019	Right-handed alpha
Helix 100	AL1	F	1023	1032	Right-handed alpha
Helix 101	AL2	F	1045	1052	Right-handed alpha
Helix 102	AL3	F	1052	1068	Right-handed alpha
Helix 103	AL4	F	1077	1081	Right-handed 310
Helix 104	AL5	F	1117	1127	Right-handed alpha
Helix 105	AL6	F	1176	1189	Right-handed alpha

There are 26 sheets in PDB entry 9BQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	538	542	parallel
Strand 3	A	268	272	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	239	242	parallel
Strand 3	A	132	134	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	117	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	257	258	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	514	521	anti-parallel
Strand 3	A	499	506	anti-parallel
Strand 4	A	354	358	anti-parallel
Strand 5	A	364	366	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	382	385	parallel
Strand 3	A	374	377	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	601	first strand
Strand 2	A	865	871	parallel
Strand 3	A	773	776	parallel
Strand 4	A	662	667	parallel
Strand 5	A	726	732	parallel
Strand 6	A	697	700	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	743	745	first strand
Strand 2	A	768	770	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	755	757	first strand
Strand 2	A	861	863	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	962	963	first strand
Strand 2	A	1042	1044	anti-parallel
Strand 3	A	974	976	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	982	985	first strand
Strand 2	A	1006	1009	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1071	1074	first strand
Strand 2	A	1087	1090	anti-parallel
Strand 3	A	1097	1102	anti-parallel
Strand 4	A	1130	1135	parallel
Strand 5	A	1161	1164	parallel
Strand 6	A	1146	1147	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1137	1138	first strand
Strand 2	A	1168	1169	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	44	first strand
Strand 2	F	538	542	parallel
Strand 3	F	268	272	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	91	first strand
Strand 2	F	239	242	parallel
Strand 3	F	132	134	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	114	first strand
Strand 2	F	117	118	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	251	252	first strand
Strand 2	F	257	258	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	291	292	first strand
Strand 2	F	514	521	anti-parallel
Strand 3	F	499	506	anti-parallel
Strand 4	F	354	358	anti-parallel
Strand 5	F	364	366	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	342	344	first strand
Strand 2	F	382	385	parallel
Strand 3	F	375	377	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	595	601	first strand
Strand 2	F	865	871	parallel
Strand 3	F	773	776	parallel
Strand 4	F	662	667	parallel
Strand 5	F	726	732	parallel
Strand 6	F	697	700	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	743	745	first strand
Strand 2	F	768	770	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	755	757	first strand
Strand 2	F	861	863	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	962	963	first strand
Strand 2	F	1042	1044	anti-parallel
Strand 3	F	974	976	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	983	985	first strand
Strand 2	F	1006	1008	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1071	1074	first strand
Strand 2	F	1086	1090	anti-parallel
Strand 3	F	1097	1102	anti-parallel
Strand 4	F	1130	1135	parallel
Strand 5	F	1161	1164	parallel
Strand 6	F	1146	1147	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1137	1138	first strand
Strand 2	F	1168	1169	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BQV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BQV