Analysis of interatomic Contacts of Structural Units in PDB entry:
9BRE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BRE entry

There is 1 chain in PDB entry 9BRE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 25PRO 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9BRE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 34Right-handed alpha
Helix 2
AA2
A
38 41Right-handed 310
Helix 3
AA3
A
42 47Right-handed alpha
Helix 4
AA4
A
52 58Right-handed alpha
Helix 5
AA5
A
60 74Right-handed alpha
Helix 6
AA6
A
74 92Right-handed alpha
Helix 7
AA7
A
97 110Right-handed alpha
Helix 8
AA8
A
122 135Right-handed alpha
Helix 9
AA9
A
142 155Right-handed alpha
Helix 10
AB1
A
155 163Right-handed alpha
Helix 11
AB2
A
164 179Right-handed alpha
Helix 12
AB3
A
218 226Right-handed alpha
Helix 13
AB4
A
227 241Right-handed alpha
Helix 14
AB5
A
271 277Right-handed alpha
Helix 15
AB6
A
284 304Right-handed alpha
Helix 16
AB7
A
313 315Right-handed 310
Helix 17
AB8
A
353 358Right-handed alpha
Helix 18
AB9
A
364 381Right-handed alpha
Helix 19
AC1
A
393 404Right-handed alpha
Helix 20
AC2
A
413 424Right-handed alpha
Helix 21
AC3
A
438 444Right-handed alpha
Helix 22
AC4
A
445 449Right-handed 310
Helix 23
AC5
A
452 458Right-handed alpha
Helix 24
AC6
A
493 503Right-handed alpha
Helix 25
AC7
A
507 518Right-handed alpha
Helix 26
AC8
A
519 525Right-handed alpha
Helix 27
AC9
A
534 538Right-handed 310
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There are 4 sheets in PDB entry 9BRE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
198 199anti-parallel
Strand 3
A
216 217anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
211 214anti-parallel
Strand 3
A
258 263anti-parallel
Strand 4
A
249 255anti-parallel
Strand 5
A
505 506anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
317 319anti-parallel
Strand 3
A
325 327anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
334 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il