Analysis of interatomic Contacts of Structural Units in PDB entry:
9BRY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BRY entry

There are 16 chains in PDB entry 9BRY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
c	HIS 249	ASP 451
b	THR 3	GLY 206
d	SER 4	PHE 353
f	LEU 5	ASN 90
g	ASN 6	LYS 155
h	ASN 6	LYS 155
i	ASN 6	LYS 155
j	ASN 6	LYS 155
k	ASN 6	LYS 155
l	ASN 6	LYS 155
m	ASN 6	LYS 155
n	ASN 6	LYS 155
o	ASN 6	LYS 155
p	PRO 590	THR 641
e	ALA 3	GLU 81
a	ARG 6	GLU 829

There are133 helices in PDB entry 9BRY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	c	418	442	Right-handed alpha
Helix 2	AA2	b	4	30	Right-handed alpha
Helix 3	AA3	b	37	45	Right-handed alpha
Helix 4	AA4	b	46	81	Right-handed alpha
Helix 5	AA5	b	86	91	Right-handed alpha
Helix 6	AA6	b	92	114	Right-handed alpha
Helix 7	AA7	b	123	128	Right-handed alpha
Helix 8	AA8	b	128	168	Right-handed alpha
Helix 9	AA9	b	173	185	Right-handed alpha
Helix 10	AB1	b	185	199	Right-handed alpha
Helix 11	AB2	d	5	10	Right-handed alpha
Helix 12	AB3	d	11	27	Right-handed alpha
Helix 13	AB4	d	31	39	Right-handed alpha
Helix 14	AB5	d	43	53	Right-handed alpha
Helix 15	AB6	d	68	90	Right-handed alpha
Helix 16	AB7	d	92	120	Right-handed alpha
Helix 17	AB8	d	126	131	Right-handed alpha
Helix 18	AB9	d	132	136	Right-handed 310
Helix 19	AC1	d	140	146	Right-handed 310
Helix 20	AC2	d	148	158	Right-handed alpha
Helix 21	AC3	d	160	166	Right-handed 310
Helix 22	AC4	d	179	203	Right-handed alpha
Helix 23	AC5	d	204	229	Right-handed alpha
Helix 24	AC6	d	235	242	Right-handed alpha
Helix 25	AC7	d	251	256	Right-handed alpha
Helix 26	AC8	d	257	260	Right-handed 310
Helix 27	AC9	d	262	272	Right-handed alpha
Helix 28	AD1	d	273	283	Right-handed alpha
Helix 29	AD2	d	291	308	Right-handed alpha
Helix 30	AD3	d	315	340	Right-handed alpha
Helix 31	AD4	f	8	37	Right-handed alpha
Helix 32	AD5	f	55	89	Right-handed alpha
Helix 33	AD6	g	11	46	Right-handed alpha
Helix 34	AD7	g	48	50	Right-handed 310
Helix 35	AD8	g	51	56	Right-handed alpha
Helix 36	AD9	g	56	74	Right-handed alpha
Helix 37	AE1	g	75	79	Right-handed 310
Helix 38	AE2	g	85	122	Right-handed alpha
Helix 39	AE3	g	126	152	Right-handed alpha
Helix 40	AE4	h	8	10	Right-handed 310
Helix 41	AE5	h	11	44	Right-handed alpha
Helix 42	AE6	h	48	52	Right-handed 310
Helix 43	AE7	h	56	79	Right-handed alpha
Helix 44	AE8	h	85	121	Right-handed alpha
Helix 45	AE9	h	126	153	Right-handed alpha
Helix 46	AF1	i	8	10	Right-handed 310
Helix 47	AF2	i	11	45	Right-handed alpha
Helix 48	AF3	i	48	55	Right-handed 310
Helix 49	AF4	i	56	78	Right-handed alpha
Helix 50	AF5	i	85	121	Right-handed alpha
Helix 51	AF6	i	122	123	Right-handed 310
Helix 52	AF7	i	124	126	Right-handed 310
Helix 53	AF8	i	127	153	Right-handed alpha
Helix 54	AF9	j	11	45	Right-handed alpha
Helix 55	AG1	j	48	54	Right-handed 310
Helix 56	AG2	j	56	61	Right-handed alpha
Helix 57	AG3	j	63	79	Right-handed alpha
Helix 58	AG4	j	85	121	Right-handed alpha
Helix 59	AG5	j	126	155	Right-handed alpha
Helix 60	AG6	k	8	11	Right-handed 310
Helix 61	AG7	k	12	45	Right-handed alpha
Helix 62	AG8	k	46	47	Right-handed 310
Helix 63	AG9	k	48	52	Right-handed 310
Helix 64	AH1	k	56	79	Right-handed alpha
Helix 65	AH2	k	85	122	Right-handed alpha
Helix 66	AH3	k	123	125	Right-handed 310
Helix 67	AH4	k	126	150	Right-handed alpha
Helix 68	AH5	k	150	155	Right-handed alpha
Helix 69	AH6	l	8	10	Right-handed 310
Helix 70	AH7	l	11	45	Right-handed alpha
Helix 71	AH8	l	46	47	Right-handed 310
Helix 72	AH9	l	48	50	Right-handed 310
Helix 73	AI1	l	51	56	Right-handed alpha
Helix 74	AI2	l	56	78	Right-handed alpha
Helix 75	AI3	l	85	122	Right-handed alpha
Helix 76	AI4	l	124	126	Right-handed 310
Helix 77	AI5	l	127	153	Right-handed alpha
Helix 78	AI6	m	11	25	Right-handed alpha
Helix 79	AI7	m	25	46	Right-handed alpha
Helix 80	AI8	m	47	52	Right-handed 310
Helix 81	AI9	m	53	55	Right-handed 310
Helix 82	AJ1	m	56	78	Right-handed alpha
Helix 83	AJ2	m	85	122	Right-handed alpha
Helix 84	AJ3	m	126	155	Right-handed alpha
Helix 85	AJ4	n	11	24	Right-handed alpha
Helix 86	AJ5	n	24	45	Right-handed alpha
Helix 87	AJ6	n	48	55	Right-handed 310
Helix 88	AJ7	n	56	80	Right-handed alpha
Helix 89	AJ8	n	85	121	Right-handed alpha
Helix 90	AJ9	n	122	125	Right-handed 310
Helix 91	AK1	n	126	155	Right-handed alpha
Helix 92	AK2	o	10	45	Right-handed alpha
Helix 93	AK3	o	46	47	Right-handed 310
Helix 94	AK4	o	48	52	Right-handed 310
Helix 95	AK5	o	53	54	Right-handed 310
Helix 96	AK6	o	55	80	Right-handed alpha
Helix 97	AK7	o	85	124	Right-handed alpha
Helix 98	AK8	o	126	152	Right-handed alpha
Helix 99	AK9	p	600	628	Right-handed alpha
Helix 100	AL1	e	6	27	Right-handed alpha
Helix 101	AL2	e	33	58	Right-handed alpha
Helix 102	AL3	e	69	78	Right-handed alpha
Helix 103	AL4	a	21	33	Right-handed alpha
Helix 104	AL5	a	51	75	Right-handed alpha
Helix 105	AL6	a	92	129	Right-handed alpha
Helix 106	AL7	a	179	191	Right-handed alpha
Helix 107	AL8	a	226	241	Right-handed alpha
Helix 108	AL9	a	251	274	Right-handed alpha
Helix 109	AM1	a	274	285	Right-handed alpha
Helix 110	AM2	a	287	309	Right-handed alpha
Helix 111	AM3	a	314	318	Right-handed 310
Helix 112	AM4	a	329	344	Right-handed alpha
Helix 113	AM5	a	371	380	Right-handed alpha
Helix 114	AM6	a	391	407	Right-handed alpha
Helix 115	AM7	a	409	426	Right-handed alpha
Helix 116	AM8	a	426	432	Right-handed alpha
Helix 117	AM9	a	437	446	Right-handed alpha
Helix 118	AN1	a	446	464	Right-handed alpha
Helix 119	AN2	a	481	486	Right-handed alpha
Helix 120	AN3	a	487	489	Right-handed 310
Helix 121	AN4	a	492	500	Right-handed 310
Helix 122	AN5	a	520	525	Right-handed 310
Helix 123	AN6	a	528	563	Right-handed alpha
Helix 124	AN7	a	565	572	Right-handed alpha
Helix 125	AN8	a	572	598	Right-handed alpha
Helix 126	AN9	a	608	619	Right-handed alpha
Helix 127	AO1	a	632	651	Right-handed alpha
Helix 128	AO2	a	653	667	Right-handed alpha
Helix 129	AO3	a	713	739	Right-handed alpha
Helix 130	AO4	a	740	760	Right-handed alpha
Helix 131	AO5	a	771	790	Right-handed alpha
Helix 132	AO6	a	793	809	Right-handed alpha
Helix 133	AO7	a	811	815	Right-handed 310

There are 6 sheets in PDB entry 9BRY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	252	255	first strand
Strand 2	c	259	264	anti-parallel
Strand 3	c	394	396	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	276	278	first strand
Strand 2	c	267	271	anti-parallel
Strand 3	c	387	391	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	295	297	first strand
Strand 2	c	300	310	anti-parallel
Strand 3	c	313	326	anti-parallel
Strand 4	c	331	342	anti-parallel
Strand 5	c	357	358	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	36	38	first strand
Strand 2	a	322	324	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	171	176	first strand
Strand 2	a	217	223	anti-parallel
Strand 3	a	196	201	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	206	207	first strand
Strand 2	a	214	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BRY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BRY