Analysis of interatomic Contacts of Structural Units in PDB entry:
9BRZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BRZ entry

There are 17 chains in PDB entry 9BRZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
c	HIS 249	ASP 451
b	THR 3	GLY 206
d	SER 4	PHE 353
f	LEU 5	ASN 90
g	ASN 6	LYS 155
h	ASN 6	LYS 155
i	ASN 6	LYS 155
j	ASN 6	LYS 155
k	ASN 6	LYS 155
l	ASN 6	LYS 155
m	ASN 6	LYS 155
n	ASN 6	LYS 155
o	ASN 6	LYS 155
p	PRO 590	THR 641
s	GLN 18	GLY 228
e	ALA 3	GLU 81
a	ARG 6	GLU 829

There are137 helices in PDB entry 9BRZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	c	280	283	Right-handed 310
Helix 2	AA2	c	416	442	Right-handed alpha
Helix 3	AA3	b	5	30	Right-handed alpha
Helix 4	AA4	b	32	36	Right-handed 310
Helix 5	AA5	b	37	45	Right-handed alpha
Helix 6	AA6	b	46	82	Right-handed alpha
Helix 7	AA7	b	83	88	Right-handed 310
Helix 8	AA8	b	89	90	Right-handed 310
Helix 9	AA9	b	91	114	Right-handed alpha
Helix 10	AB1	b	123	168	Right-handed alpha
Helix 11	AB2	b	173	176	Right-handed 310
Helix 12	AB3	b	177	200	Right-handed alpha
Helix 13	AB4	d	11	16	Right-handed alpha
Helix 14	AB5	d	16	27	Right-handed alpha
Helix 15	AB6	d	31	39	Right-handed alpha
Helix 16	AB7	d	43	54	Right-handed alpha
Helix 17	AB8	d	68	89	Right-handed alpha
Helix 18	AB9	d	92	120	Right-handed alpha
Helix 19	AC1	d	127	131	Right-handed 310
Helix 20	AC2	d	132	136	Right-handed 310
Helix 21	AC3	d	141	146	Right-handed 310
Helix 22	AC4	d	148	157	Right-handed alpha
Helix 23	AC5	d	162	167	Right-handed alpha
Helix 24	AC6	d	178	203	Right-handed alpha
Helix 25	AC7	d	204	229	Right-handed alpha
Helix 26	AC8	d	235	241	Right-handed alpha
Helix 27	AC9	d	249	256	Right-handed alpha
Helix 28	AD1	d	262	271	Right-handed alpha
Helix 29	AD2	d	273	283	Right-handed alpha
Helix 30	AD3	d	291	307	Right-handed alpha
Helix 31	AD4	d	315	341	Right-handed alpha
Helix 32	AD5	d	345	349	Right-handed 310
Helix 33	AD6	f	8	11	Right-handed 310
Helix 34	AD7	f	12	35	Right-handed alpha
Helix 35	AD8	f	54	68	Right-handed alpha
Helix 36	AD9	f	68	89	Right-handed alpha
Helix 37	AE1	g	10	23	Right-handed alpha
Helix 38	AE2	g	24	46	Right-handed alpha
Helix 39	AE3	g	48	55	Right-handed 310
Helix 40	AE4	g	56	79	Right-handed alpha
Helix 41	AE5	g	85	122	Right-handed alpha
Helix 42	AE6	g	126	152	Right-handed alpha
Helix 43	AE7	h	8	10	Right-handed 310
Helix 44	AE8	h	11	48	Right-handed alpha
Helix 45	AE9	h	49	52	Right-handed 310
Helix 46	AF1	h	56	79	Right-handed alpha
Helix 47	AF2	h	85	124	Right-handed alpha
Helix 48	AF3	h	126	153	Right-handed alpha
Helix 49	AF4	i	11	46	Right-handed alpha
Helix 50	AF5	i	47	50	Right-handed 310
Helix 51	AF6	i	51	56	Right-handed alpha
Helix 52	AF7	i	56	79	Right-handed alpha
Helix 53	AF8	i	85	122	Right-handed alpha
Helix 54	AF9	i	123	126	Right-handed 310
Helix 55	AG1	i	127	153	Right-handed alpha
Helix 56	AG2	j	11	48	Right-handed alpha
Helix 57	AG3	j	53	55	Right-handed 310
Helix 58	AG4	j	56	79	Right-handed alpha
Helix 59	AG5	j	85	122	Right-handed alpha
Helix 60	AG6	j	126	153	Right-handed alpha
Helix 61	AG7	k	9	43	Right-handed alpha
Helix 62	AG8	k	48	55	Right-handed 310
Helix 63	AG9	k	56	80	Right-handed alpha
Helix 64	AH1	k	85	122	Right-handed alpha
Helix 65	AH2	k	126	154	Right-handed alpha
Helix 66	AH3	l	10	45	Right-handed alpha
Helix 67	AH4	l	48	55	Right-handed 310
Helix 68	AH5	l	56	79	Right-handed alpha
Helix 69	AH6	l	85	124	Right-handed alpha
Helix 70	AH7	l	126	154	Right-handed alpha
Helix 71	AH8	m	10	45	Right-handed alpha
Helix 72	AH9	m	46	47	Right-handed 310
Helix 73	AI1	m	48	50	Right-handed 310
Helix 74	AI2	m	51	56	Right-handed alpha
Helix 75	AI3	m	56	77	Right-handed alpha
Helix 76	AI4	m	85	124	Right-handed alpha
Helix 77	AI5	m	127	153	Right-handed alpha
Helix 78	AI6	n	10	46	Right-handed alpha
Helix 79	AI7	n	48	55	Right-handed 310
Helix 80	AI8	n	56	80	Right-handed alpha
Helix 81	AI9	n	85	122	Right-handed alpha
Helix 82	AJ1	n	123	125	Right-handed 310
Helix 83	AJ2	n	126	154	Right-handed alpha
Helix 84	AJ3	o	11	45	Right-handed alpha
Helix 85	AJ4	o	46	47	Right-handed 310
Helix 86	AJ5	o	48	55	Right-handed 310
Helix 87	AJ6	o	56	80	Right-handed alpha
Helix 88	AJ7	o	85	124	Right-handed alpha
Helix 89	AJ8	o	126	154	Right-handed alpha
Helix 90	AJ9	p	600	628	Right-handed alpha
Helix 91	AK1	s	19	24	Right-handed alpha
Helix 92	AK2	s	24	45	Right-handed alpha
Helix 93	AK3	s	101	128	Right-handed alpha
Helix 94	AK4	s	129	134	Right-handed alpha
Helix 95	AK5	s	138	172	Right-handed alpha
Helix 96	AK6	s	173	181	Right-handed alpha
Helix 97	AK7	s	182	186	Right-handed 310
Helix 98	AK8	s	199	228	Right-handed alpha
Helix 99	AK9	e	6	28	Right-handed alpha
Helix 100	AL1	e	33	60	Right-handed alpha
Helix 101	AL2	e	69	80	Right-handed alpha
Helix 102	AL3	a	21	33	Right-handed alpha
Helix 103	AL4	a	51	75	Right-handed alpha
Helix 104	AL5	a	92	116	Right-handed alpha
Helix 105	AL6	a	116	130	Right-handed alpha
Helix 106	AL7	a	176	178	Right-handed 310
Helix 107	AL8	a	179	192	Right-handed alpha
Helix 108	AL9	a	226	238	Right-handed alpha
Helix 109	AM1	a	239	241	Right-handed 310
Helix 110	AM2	a	251	274	Right-handed alpha
Helix 111	AM3	a	275	285	Right-handed alpha
Helix 112	AM4	a	286	289	Right-handed 310
Helix 113	AM5	a	290	310	Right-handed alpha
Helix 114	AM6	a	314	318	Right-handed 310
Helix 115	AM7	a	326	328	Right-handed 310
Helix 116	AM8	a	329	344	Right-handed alpha
Helix 117	AM9	a	371	382	Right-handed alpha
Helix 118	AN1	a	391	406	Right-handed alpha
Helix 119	AN2	a	409	426	Right-handed alpha
Helix 120	AN3	a	426	432	Right-handed alpha
Helix 121	AN4	a	437	446	Right-handed alpha
Helix 122	AN5	a	446	465	Right-handed alpha
Helix 123	AN6	a	481	488	Right-handed alpha
Helix 124	AN7	a	493	498	Right-handed alpha
Helix 125	AN8	a	520	525	Right-handed 310
Helix 126	AN9	a	528	554	Right-handed alpha
Helix 127	AO1	a	555	564	Right-handed alpha
Helix 128	AO2	a	566	571	Right-handed alpha
Helix 129	AO3	a	572	598	Right-handed alpha
Helix 130	AO4	a	599	603	Right-handed 310
Helix 131	AO5	a	608	619	Right-handed alpha
Helix 132	AO6	a	632	667	Right-handed alpha
Helix 133	AO7	a	713	738	Right-handed alpha
Helix 134	AO8	a	740	760	Right-handed alpha
Helix 135	AO9	a	761	765	Right-handed 310
Helix 136	AP1	a	771	791	Right-handed alpha
Helix 137	AP2	a	793	813	Right-handed alpha

There are 9 sheets in PDB entry 9BRZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	252	253	first strand
Strand 2	c	262	264	anti-parallel
Strand 3	c	387	396	anti-parallel
Strand 4	c	267	271	anti-parallel
Strand 5	c	277	278	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	252	253	first strand
Strand 2	c	262	264	anti-parallel
Strand 3	c	387	396	anti-parallel
Strand 4	c	362	369	anti-parallel
Strand 5	c	408	410	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	295	297	first strand
Strand 2	c	300	310	anti-parallel
Strand 3	c	313	325	anti-parallel
Strand 4	c	332	343	anti-parallel
Strand 5	c	346	351	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	295	297	first strand
Strand 2	c	300	310	anti-parallel
Strand 3	c	313	325	anti-parallel
Strand 4	c	332	343	anti-parallel
Strand 5	c	356	358	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	64	72	first strand
Strand 2	s	48	55	anti-parallel
Strand 3	s	192	195	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	81	85	first strand
Strand 2	s	92	96	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	12	13	first strand
Strand 2	a	322	324	anti-parallel
Strand 3	a	36	38	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	171	175	first strand
Strand 2	a	218	223	anti-parallel
Strand 3	a	196	201	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	206	207	first strand
Strand 2	a	214	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BRZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BRZ