Analysis of interatomic Contacts of Structural Units in PDB entry:
9BS3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BS3 entry

There are 8 chains in PDB entry 9BS3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 262GLN 900
B
 G 1 G 11
C
 G 1 C 7
D
 G 1 C 18
E
 LEU 261LYS 747
F
 G 1 G 11
G
 G 1 C 7
H
 G 1 A 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 9BS3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
262 266Right-handed 310
Helix 2
AA2
A
288 302Right-handed alpha
Helix 3
AA3
A
304 323Right-handed alpha
Helix 4
AA4
A
326 336Right-handed alpha
Helix 5
AA5
A
340 344Right-handed 310
Helix 6
AA6
A
350 363Right-handed alpha
Helix 7
AA7
A
365 377Right-handed alpha
Helix 8
AA8
A
378 386Right-handed alpha
Helix 9
AA9
A
400 414Right-handed alpha
Helix 10
AB1
A
418 434Right-handed alpha
Helix 11
AB2
A
437 447Right-handed alpha
Helix 12
AB3
A
455 470Right-handed alpha
Helix 13
AB4
A
488 510Right-handed alpha
Helix 14
AB5
A
512 524Right-handed alpha
Helix 15
AB6
A
550 559Right-handed alpha
Helix 16
AB7
A
598 604Right-handed alpha
Helix 17
AB8
A
605 608Right-handed 310
Helix 18
AB9
A
634 640Right-handed alpha
Helix 19
AC1
A
647 651Right-handed 310
Helix 20
AC2
A
674 686Right-handed alpha
Helix 21
AC3
A
703 717Right-handed alpha
Helix 22
AC4
A
768 772Right-handed 310
Helix 23
AC5
A
801 807Right-handed alpha
Helix 24
AC6
A
808 814Right-handed alpha
Helix 25
AC7
A
883 887Right-handed 310
Helix 26
AC8
A
889 900Right-handed alpha
Helix 27
AC9
E
262 266Right-handed 310
Helix 28
AD1
E
288 302Right-handed alpha
Helix 29
AD2
E
304 323Right-handed alpha
Helix 30
AD3
E
326 336Right-handed alpha
Helix 31
AD4
E
340 344Right-handed 310
Helix 32
AD5
E
350 363Right-handed alpha
Helix 33
AD6
E
365 377Right-handed alpha
Helix 34
AD7
E
379 384Right-handed 310
Helix 35
AD8
E
400 414Right-handed alpha
Helix 36
AD9
E
418 433Right-handed alpha
Helix 37
AE1
E
437 448Right-handed alpha
Helix 38
AE2
E
455 470Right-handed alpha
Helix 39
AE3
E
488 510Right-handed alpha
Helix 40
AE4
E
512 524Right-handed alpha
Helix 41
AE5
E
550 558Right-handed alpha
Helix 42
AE6
E
598 609Right-handed alpha
Helix 43
AE7
E
634 640Right-handed alpha
Helix 44
AE8
E
647 651Right-handed 310
Helix 45
AE9
E
674 686Right-handed alpha
Helix 46
AF1
E
703 717Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9BS3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 547first strand
Strand 2
A
738 746parallel
Strand 3
A
721 726anti-parallel
Strand 4
A
563 567anti-parallel
Strand 5
A
698 700anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 587first strand
Strand 2
A
572 578anti-parallel
Strand 3
A
616 626anti-parallel
Strand 4
A
655 665anti-parallel
Strand 5
A
668 669anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 632first strand
Strand 2
A
616 626anti-parallel
Strand 3
A
655 665anti-parallel
Strand 4
A
693 695parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 817first strand
Strand 2
A
834 836anti-parallel
Strand 3
A
756 766anti-parallel
Strand 4
A
775 784anti-parallel
Strand 5
A
789 796anti-parallel
Strand 6
A
824 825parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 817first strand
Strand 2
A
834 836anti-parallel
Strand 3
A
756 766anti-parallel
Strand 4
A
841 851anti-parallel
Strand 5
A
868 878anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
544 547first strand
Strand 2
E
738 745parallel
Strand 3
E
722 726anti-parallel
Strand 4
E
563 567anti-parallel
Strand 5
E
698 700anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
584 587first strand
Strand 2
E
572 578anti-parallel
Strand 3
E
616 626anti-parallel
Strand 4
E
654 665anti-parallel
Strand 5
E
668 669anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
631 632first strand
Strand 2
E
616 626anti-parallel
Strand 3
E
654 665anti-parallel
Strand 4
E
693 695parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il