Analysis of interatomic Contacts of Structural Units in PDB entry:
9BS5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BS5 entry

There are 2 chains in PDB entry 9BS5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 22	VAL 726
B	GLN 22	MET 599

There are 37 helices in PDB entry 9BS5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	204	213	Right-handed alpha
Helix 2	AA2	A	296	303	Right-handed alpha
Helix 3	AA3	A	304	309	Right-handed alpha
Helix 4	AA4	A	317	322	Right-handed alpha
Helix 5	AA5	A	331	336	Right-handed alpha
Helix 6	AA6	A	356	360	Right-handed 310
Helix 7	AA7	A	369	383	Right-handed alpha
Helix 8	AA8	A	396	400	Right-handed 310
Helix 9	AA9	A	419	430	Right-handed alpha
Helix 10	AB1	A	443	461	Right-handed alpha
Helix 11	AB2	A	483	500	Right-handed alpha
Helix 12	AB3	A	514	518	Right-handed 310
Helix 13	AB4	A	530	535	Right-handed 310
Helix 14	AB5	A	542	550	Right-handed 310
Helix 15	AB6	A	567	571	Right-handed 310
Helix 16	AB7	A	582	593	Right-handed alpha
Helix 17	AB8	A	603	610	Right-handed alpha
Helix 18	AB9	A	610	620	Right-handed alpha
Helix 19	AC1	B	87	89	Right-handed 310
Helix 20	AC2	B	204	213	Right-handed alpha
Helix 21	AC3	B	297	303	Right-handed alpha
Helix 22	AC4	B	304	309	Right-handed alpha
Helix 23	AC5	B	317	321	Right-handed 310
Helix 24	AC6	B	331	336	Right-handed alpha
Helix 25	AC7	B	356	360	Right-handed 310
Helix 26	AC8	B	369	383	Right-handed alpha
Helix 27	AC9	B	396	400	Right-handed 310
Helix 28	AD1	B	419	430	Right-handed alpha
Helix 29	AD2	B	443	461	Right-handed alpha
Helix 30	AD3	B	483	500	Right-handed alpha
Helix 31	AD4	B	514	518	Right-handed 310
Helix 32	AD5	B	530	536	Right-handed 310
Helix 33	AD6	B	542	550	Right-handed 310
Helix 34	AD7	B	567	571	Right-handed 310
Helix 35	AD8	B	582	593	Right-handed alpha
Helix 36	AD9	B	603	608	Right-handed alpha
Helix 37	AE1	B	610	620	Right-handed alpha

There are 16 sheets in PDB entry 9BS5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	44	50	anti-parallel
Strand 4	A	53	60	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	63	65	anti-parallel
Strand 3	A	165	171	anti-parallel
Strand 4	A	279	281	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	110	first strand
Strand 2	A	120	133	anti-parallel
Strand 3	A	138	147	anti-parallel
Strand 4	A	150	157	anti-parallel
Strand 5	A	288	294	anti-parallel
Strand 6	A	240	246	anti-parallel
Strand 7	A	231	234	anti-parallel
Strand 8	A	182	185	anti-parallel
Strand 9	A	198	201	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	110	first strand
Strand 2	A	120	133	anti-parallel
Strand 3	A	138	147	anti-parallel
Strand 4	A	150	157	anti-parallel
Strand 5	A	284	285	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	264	269	anti-parallel
Strand 3	A	254	259	anti-parallel
Strand 4	A	226	227	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	525	first strand
Strand 2	A	503	506	parallel
Strand 3	A	465	469	parallel
Strand 4	A	433	439	parallel
Strand 5	A	387	390	parallel
Strand 6	A	325	330	parallel
Strand 7	A	597	599	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	633	first strand
Strand 2	A	637	644	anti-parallel
Strand 3	A	650	656	anti-parallel
Strand 4	A	718	725	anti-parallel
Strand 5	A	676	683	anti-parallel
Strand 6	A	696	703	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	666	first strand
Strand 2	A	708	713	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	32	38	anti-parallel
Strand 3	B	44	50	anti-parallel
Strand 4	B	53	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	63	65	anti-parallel
Strand 3	B	165	171	anti-parallel
Strand 4	B	279	281	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	110	first strand
Strand 2	B	120	133	anti-parallel
Strand 3	B	138	147	anti-parallel
Strand 4	B	150	157	anti-parallel
Strand 5	B	288	294	anti-parallel
Strand 6	B	240	246	anti-parallel
Strand 7	B	231	234	anti-parallel
Strand 8	B	182	185	anti-parallel
Strand 9	B	198	201	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	110	first strand
Strand 2	B	120	133	anti-parallel
Strand 3	B	138	147	anti-parallel
Strand 4	B	150	157	anti-parallel
Strand 5	B	284	285	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	264	269	anti-parallel
Strand 3	B	254	259	anti-parallel
Strand 4	B	226	227	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	522	525	first strand
Strand 2	B	503	506	parallel
Strand 3	B	465	469	parallel
Strand 4	B	433	439	parallel
Strand 5	B	387	390	parallel
Strand 6	B	325	330	parallel
Strand 7	B	597	599	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	624	633	first strand
Strand 2	B	637	644	anti-parallel
Strand 3	B	650	656	anti-parallel
Strand 4	B	718	725	anti-parallel
Strand 5	B	676	683	anti-parallel
Strand 6	B	696	703	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	661	666	first strand
Strand 2	B	708	713	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BS5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BS5