Analysis of interatomic Contacts of Structural Units in PDB entry:
9BSH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BSH entry

There are 2 chains in PDB entry 9BSH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 38	GLU 280
B	ALA 38	GLU 280

There are 20 helices in PDB entry 9BSH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	57	Right-handed alpha
Helix 2	AA2	A	59	63	Right-handed 310
Helix 3	AA3	A	72	77	Right-handed alpha
Helix 4	AA4	A	80	82	Right-handed 310
Helix 5	AA5	A	108	113	Right-handed alpha
Helix 6	AA6	A	114	116	Right-handed 310
Helix 7	AA7	A	118	120	Right-handed 310
Helix 8	AA8	A	172	177	Right-handed alpha
Helix 9	AA9	A	229	233	Right-handed 310
Helix 10	AB1	A	268	279	Right-handed alpha
Helix 11	AB2	B	41	57	Right-handed alpha
Helix 12	AB3	B	59	63	Right-handed 310
Helix 13	AB4	B	72	77	Right-handed alpha
Helix 14	AB5	B	80	82	Right-handed 310
Helix 15	AB6	B	108	113	Right-handed alpha
Helix 16	AB7	B	114	116	Right-handed 310
Helix 17	AB8	B	118	120	Right-handed 310
Helix 18	AB9	B	172	177	Right-handed alpha
Helix 19	AC1	B	229	233	Right-handed 310
Helix 20	AC2	B	268	279	Right-handed alpha

There are 8 sheets in PDB entry 9BSH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	209	215	anti-parallel
Strand 3	A	193	198	anti-parallel
Strand 4	A	236	238	anti-parallel
Strand 5	A	243	253	anti-parallel
Strand 6	A	181	182	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	209	215	anti-parallel
Strand 3	A	222	225	anti-parallel
Strand 4	A	260	266	anti-parallel
Strand 5	A	243	253	anti-parallel
Strand 6	A	181	182	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	89	first strand
Strand 2	A	95	101	anti-parallel
Strand 3	A	104	107	anti-parallel
Strand 4	A	160	164	anti-parallel
Strand 5	A	143	149	anti-parallel
Strand 6	A	122	126	anti-parallel
Strand 7	A	84	89	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	136	137	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	209	215	anti-parallel
Strand 3	B	193	198	anti-parallel
Strand 4	B	236	238	anti-parallel
Strand 5	B	243	253	anti-parallel
Strand 6	B	181	182	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	209	215	anti-parallel
Strand 3	B	222	225	anti-parallel
Strand 4	B	260	266	anti-parallel
Strand 5	B	243	253	anti-parallel
Strand 6	B	181	182	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	89	first strand
Strand 2	B	95	101	anti-parallel
Strand 3	B	104	107	anti-parallel
Strand 4	B	160	164	anti-parallel
Strand 5	B	143	149	anti-parallel
Strand 6	B	122	126	anti-parallel
Strand 7	B	84	89	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	136	137	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BSH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BSH