Analysis of interatomic Contacts of Structural Units in PDB entry:
9BSV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BSV entry

There are 6 chains in PDB entry 9BSV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLN 1	SER 123
A	SER 32	HIS 613
B	SER 32	HIS 613
C	SER 32	HIS 613
E	GLN 1	SER 123
F	GLN 1	SER 123

There are 26 helices in PDB entry 9BSV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	28	30	Right-handed 310
Helix 2	AA2	D	87	91	Right-handed 310
Helix 3	AA3	D	106	110	Right-handed 310
Helix 4	AA4	A	59	61	Right-handed 310
Helix 5	AA5	A	71	74	Right-handed 310
Helix 6	AA6	A	78	84	Right-handed alpha
Helix 7	AA7	A	552	576	Right-handed alpha
Helix 8	AA8	A	583	597	Right-handed alpha
Helix 9	AA9	B	59	61	Right-handed 310
Helix 10	AB1	B	71	74	Right-handed 310
Helix 11	AB2	B	78	84	Right-handed alpha
Helix 12	AB3	B	552	565	Right-handed alpha
Helix 13	AB4	B	565	576	Right-handed alpha
Helix 14	AB5	B	583	597	Right-handed alpha
Helix 15	AB6	C	59	61	Right-handed 310
Helix 16	AB7	C	71	74	Right-handed 310
Helix 17	AB8	C	78	84	Right-handed alpha
Helix 18	AB9	C	552	565	Right-handed alpha
Helix 19	AC1	C	565	576	Right-handed alpha
Helix 20	AC2	C	584	597	Right-handed alpha
Helix 21	AC3	E	28	30	Right-handed 310
Helix 22	AC4	E	87	91	Right-handed 310
Helix 23	AC5	E	106	110	Right-handed 310
Helix 24	AC6	F	28	30	Right-handed 310
Helix 25	AC7	F	87	91	Right-handed 310
Helix 26	AC8	F	106	110	Right-handed 310

There are 25 sheets in PDB entry 9BSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	117	122	parallel
Strand 3	D	92	100	anti-parallel
Strand 4	D	32	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	117	122	parallel
Strand 3	D	92	100	anti-parallel
Strand 4	D	112	113	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	36	38	anti-parallel
Strand 3	A	177	185	parallel
Strand 4	A	63	69	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	36	38	anti-parallel
Strand 3	A	177	185	parallel
Strand 4	A	159	161	anti-parallel
Strand 5	A	166	167	anti-parallel
Strand 6	A	96	97	anti-parallel
Strand 7	A	580	581	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	151	154	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	517	520	anti-parallel
Strand 3	A	543	545	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	114	first strand
Strand 2	A	135	144	parallel
Strand 3	A	216	219	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	114	first strand
Strand 2	A	135	144	parallel
Strand 3	A	222	223	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	46	first strand
Strand 2	B	35	39	anti-parallel
Strand 3	B	177	185	parallel
Strand 4	B	63	69	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	46	first strand
Strand 2	B	35	39	anti-parallel
Strand 3	B	177	185	parallel
Strand 4	B	159	161	anti-parallel
Strand 5	B	165	167	anti-parallel
Strand 6	B	96	98	anti-parallel
Strand 7	B	580	581	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	89	first strand
Strand 2	B	151	154	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	111	first strand
Strand 2	B	135	144	parallel
Strand 3	B	216	223	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	519	first strand
Strand 2	B	544	545	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	63	69	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	159	161	anti-parallel
Strand 5	C	165	167	anti-parallel
Strand 6	C	96	98	anti-parallel
Strand 7	C	580	581	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	151	154	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	C	517	519	anti-parallel
Strand 3	C	544	545	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	114	first strand
Strand 2	C	135	144	parallel
Strand 3	C	216	222	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	117	122	parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	32	39	anti-parallel
Strand 5	E	45	51	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	117	122	parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	112	113	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	117	122	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	32	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	117	122	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	112	113	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BSV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BSV