Analysis of interatomic Contacts of Structural Units in PDB entry:
9BTH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BTH entry

There are 9 chains in PDB entry 9BTH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	ASP 100
H	TYR 100	SER 113
L	ASP 1	GLU 105
G	GLY 33	THR 504
C	VAL 513	LEU 663
D	GLY 33	THR 504
E	LEU 515	LEU 663
F	GLY 33	THR 504
B	VAL 512	LEU 663

There are 45 helices in PDB entry 9BTH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	61	65	Right-handed 310
Helix 2	AA2	H	83	87	Right-handed 310
Helix 3	AA3	L	79	83	Right-handed 310
Helix 4	AA4	G	98	107	Right-handed alpha
Helix 5	AA5	G	108	117	Right-handed alpha
Helix 6	AA6	G	122	126	Right-handed 310
Helix 7	AA7	G	195	198	Right-handed 310
Helix 8	AA8	G	335	351	Right-handed alpha
Helix 9	AA9	G	475	481	Right-handed alpha
Helix 10	AB1	C	515	520	Right-handed alpha
Helix 11	AB2	C	521	524	Right-handed 310
Helix 12	AB3	C	529	534	Right-handed alpha
Helix 13	AB4	C	537	541	Right-handed 310
Helix 14	AB5	C	570	596	Right-handed alpha
Helix 15	AB6	C	618	623	Right-handed alpha
Helix 16	AB7	C	627	636	Right-handed alpha
Helix 17	AB8	C	638	662	Right-handed alpha
Helix 18	AB9	D	100	107	Right-handed alpha
Helix 19	AC1	D	108	117	Right-handed alpha
Helix 20	AC2	D	122	126	Right-handed 310
Helix 21	AC3	D	195	197	Right-handed 310
Helix 22	AC4	D	334	356	Right-handed alpha
Helix 23	AC5	D	425	429	Right-handed 310
Helix 24	AC6	D	474	478	Right-handed 310
Helix 25	AC7	D	479	484	Right-handed alpha
Helix 26	AC8	E	518	524	Right-handed alpha
Helix 27	AC9	E	532	540	Right-handed alpha
Helix 28	AD1	E	569	596	Right-handed alpha
Helix 29	AD2	E	618	623	Right-handed alpha
Helix 30	AD3	E	627	636	Right-handed alpha
Helix 31	AD4	E	638	663	Right-handed alpha
Helix 32	AD5	F	99	116	Right-handed alpha
Helix 33	AD6	F	122	126	Right-handed 310
Helix 34	AD7	F	334	349	Right-handed alpha
Helix 35	AD8	F	350	353	Right-handed 310
Helix 36	AD9	F	475	483	Right-handed alpha
Helix 37	AE1	F	484	486	Right-handed 310
Helix 38	AE2	B	516	524	Right-handed alpha
Helix 39	AE3	B	529	537	Right-handed alpha
Helix 40	AE4	B	538	541	Right-handed 310
Helix 41	AE5	B	569	597	Right-handed alpha
Helix 42	AE6	B	611	615	Right-handed 310
Helix 43	AE7	B	618	623	Right-handed alpha
Helix 44	AE8	B	627	636	Right-handed alpha
Helix 45	AE9	B	638	662	Right-handed alpha

There are 37 sheets in PDB entry 9BTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	100	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	100	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	66	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	103	105	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	103	105	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	495	499	first strand
Strand 2	G	35	39	anti-parallel
Strand 3	C	603	609	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	488	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	53	56	parallel
Strand 3	G	216	218	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	236	239	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	132	first strand
Strand 2	G	154	159	anti-parallel
Strand 3	G	172	177	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	182	first strand
Strand 2	G	192	193	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	200	203	first strand
Strand 2	G	432	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	443	452	anti-parallel
Strand 3	G	284	298	anti-parallel
Strand 4	G	272	274	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	443	452	anti-parallel
Strand 3	G	284	298	anti-parallel
Strand 4	G	330	334	anti-parallel
Strand 5	G	408	415	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	301	308	first strand
Strand 2	G	316	323	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	359	361	first strand
Strand 2	G	466	470	parallel
Strand 3	G	454	456	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	383	385	first strand
Strand 2	G	418	420	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	499	first strand
Strand 2	D	35	40	anti-parallel
Strand 3	E	603	609	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	486	491	anti-parallel
Strand 3	D	224	228	anti-parallel
Strand 4	D	242	245	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	216	218	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	238	239	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	130	first strand
Strand 2	D	190	193	anti-parallel
Strand 3	D	181	183	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	162	first strand
Strand 2	D	169	177	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	434	435	parallel
Strand 3	D	423	424	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	284	287	anti-parallel
Strand 3	D	453	456	anti-parallel
Strand 4	D	466	470	anti-parallel
Strand 5	D	359	361	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	414	415	first strand
Strand 2	D	330	333	anti-parallel
Strand 3	D	292	298	anti-parallel
Strand 4	D	443	449	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	308	first strand
Strand 2	D	316	320	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	377	first strand
Strand 2	D	382	385	anti-parallel
Strand 3	D	418	420	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	496	499	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	488	491	anti-parallel
Strand 3	F	223	228	anti-parallel
Strand 4	F	242	245	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	94	first strand
Strand 2	F	236	238	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	177	first strand
Strand 2	F	154	162	anti-parallel
Strand 3	F	129	133	anti-parallel
Strand 4	F	190	193	anti-parallel
Strand 5	F	181	183	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	201	203	first strand
Strand 2	F	433	435	parallel
Strand 3	F	423	424	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	261	first strand
Strand 2	F	446	456	anti-parallel
Strand 3	F	283	297	anti-parallel
Strand 4	F	466	470	first strand
Strand 5	F	359	361	parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	273	first strand
Strand 2	F	283	297	anti-parallel
Strand 3	F	446	456	anti-parallel
Strand 4	F	330	333	first strand
Strand 5	F	414	419	anti-parallel
Strand 6	F	381	385	anti-parallel
Strand 7	F	374	378	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	302	307	first strand
Strand 2	F	317	322	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BTH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BTH