Analysis of interatomic Contacts of Structural Units in PDB entry:
9BUM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BUM entry

There is 1 chain in PDB entry 9BUM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 47PRO 727
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9BUM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 56Right-handed alpha
Helix 2
AA2
A
61 73Right-handed alpha
Helix 3
AA3
A
77 82Right-handed alpha
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
111 132Right-handed alpha
Helix 6
AA6
A
134 139Right-handed alpha
Helix 7
AA7
A
139 144Right-handed alpha
Helix 8
AA8
A
149 157Right-handed 310
Helix 9
AA9
A
162 174Right-handed alpha
Helix 10
AB1
A
175 179Right-handed 310
Helix 11
AB2
A
197 217Right-handed alpha
Helix 12
AB3
A
218 220Right-handed 310
Helix 13
AB4
A
298 306Right-handed alpha
Helix 14
AB5
A
307 310Right-handed 310
Helix 15
AB6
A
314 318Right-handed 310
Helix 16
AB7
A
325 329Right-handed 310
Helix 17
AB8
A
357 362Right-handed alpha
Helix 18
AB9
A
368 375Right-handed alpha
Helix 19
AC1
A
376 380Right-handed 310
Helix 20
AC2
A
441 455Right-handed alpha
Helix 21
AC3
A
456 459Right-handed 310
Helix 22
AC4
A
506 510Right-handed 310
Helix 23
AC5
A
511 523Right-handed alpha
Helix 24
AC6
A
605 614Right-handed alpha
Helix 25
AC7
A
677 708Right-handed alpha
Helix 26
AC8
A
712 725Right-handed alpha
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There are 4 sheets in PDB entry 9BUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
195 196anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 426first strand
Strand 2
A
413 416anti-parallel
Strand 3
A
464 466anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 471first strand
Strand 2
A
478 480anti-parallel
Strand 3
A
528 534parallel
Strand 4
A
597 603anti-parallel
Strand 5
A
551 557anti-parallel
Strand 6
A
578 581anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 543first strand
Strand 2
A
586 591anti-parallel
Strand 3
A
560 564anti-parallel
Strand 4
A
569 572anti-parallel
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