Analysis of interatomic Contacts of Structural Units in PDB entry:
9BW9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BW9 entry

There are 8 chains in PDB entry 9BW9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	MET 348	LYS 424
H	MET 348	LYS 424
C	PHE 1	ILE 267
D	PHE 1	ARG 269
E	MET 348	LYS 424
F	MET 348	LYS 424
A	PHE 1	ILE 267
B	PHE 1	ARG 269

There are 60 helices in PDB entry 9BW9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	348	362	Right-handed alpha
Helix 2	AA2	G	369	381	Right-handed alpha
Helix 3	AA3	G	386	393	Right-handed alpha
Helix 4	AA4	G	394	404	Right-handed alpha
Helix 5	AA5	G	411	424	Right-handed alpha
Helix 6	AA6	H	349	363	Right-handed alpha
Helix 7	AA7	H	369	383	Right-handed alpha
Helix 8	AA8	H	386	393	Right-handed alpha
Helix 9	AA9	H	394	403	Right-handed alpha
Helix 10	AB1	H	404	406	Right-handed 310
Helix 11	AB2	H	409	424	Right-handed alpha
Helix 12	AB3	C	3	15	Right-handed alpha
Helix 13	AB4	C	18	26	Right-handed alpha
Helix 14	AB5	C	29	39	Right-handed alpha
Helix 15	AB6	C	93	106	Right-handed alpha
Helix 16	AB7	C	123	133	Right-handed alpha
Helix 17	AB8	C	150	166	Right-handed alpha
Helix 18	AB9	C	167	169	Right-handed 310
Helix 19	AC1	C	175	185	Right-handed alpha
Helix 20	AC2	C	198	222	Right-handed alpha
Helix 21	AC3	D	2	15	Right-handed alpha
Helix 22	AC4	D	18	26	Right-handed alpha
Helix 23	AC5	D	29	40	Right-handed alpha
Helix 24	AC6	D	41	45	Right-handed 310
Helix 25	AC7	D	93	107	Right-handed alpha
Helix 26	AC8	D	123	133	Right-handed alpha
Helix 27	AC9	D	150	167	Right-handed alpha
Helix 28	AD1	D	171	174	Right-handed 310
Helix 29	AD2	D	175	185	Right-handed alpha
Helix 30	AD3	D	195	221	Right-handed alpha
Helix 31	AD4	E	349	362	Right-handed alpha
Helix 32	AD5	E	369	381	Right-handed alpha
Helix 33	AD6	E	386	393	Right-handed alpha
Helix 34	AD7	E	394	404	Right-handed alpha
Helix 35	AD8	E	411	424	Right-handed alpha
Helix 36	AD9	F	349	363	Right-handed alpha
Helix 37	AE1	F	369	383	Right-handed alpha
Helix 38	AE2	F	386	393	Right-handed alpha
Helix 39	AE3	F	394	403	Right-handed alpha
Helix 40	AE4	F	404	406	Right-handed 310
Helix 41	AE5	F	409	424	Right-handed alpha
Helix 42	AE6	A	3	15	Right-handed alpha
Helix 43	AE7	A	18	26	Right-handed alpha
Helix 44	AE8	A	29	39	Right-handed alpha
Helix 45	AE9	A	93	106	Right-handed alpha
Helix 46	AF1	A	123	133	Right-handed alpha
Helix 47	AF2	A	150	166	Right-handed alpha
Helix 48	AF3	A	167	169	Right-handed 310
Helix 49	AF4	A	175	185	Right-handed alpha
Helix 50	AF5	A	198	222	Right-handed alpha
Helix 51	AF6	B	2	15	Right-handed alpha
Helix 52	AF7	B	18	26	Right-handed alpha
Helix 53	AF8	B	29	40	Right-handed alpha
Helix 54	AF9	B	41	45	Right-handed 310
Helix 55	AG1	B	93	107	Right-handed alpha
Helix 56	AG2	B	123	133	Right-handed alpha
Helix 57	AG3	B	150	167	Right-handed alpha
Helix 58	AG4	B	171	174	Right-handed 310
Helix 59	AG5	B	175	185	Right-handed alpha
Helix 60	AG6	B	195	221	Right-handed alpha

There are 8 sheets in PDB entry 9BW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	89	first strand
Strand 2	C	71	78	anti-parallel
Strand 3	C	60	68	anti-parallel
Strand 4	C	112	113	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	243	first strand
Strand 2	C	248	252	anti-parallel
Strand 3	C	257	261	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	88	first strand
Strand 2	D	71	78	anti-parallel
Strand 3	D	60	68	anti-parallel
Strand 4	D	112	115	parallel
Strand 5	D	136	139	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	261	first strand
Strand 2	D	248	253	anti-parallel
Strand 3	D	239	244	anti-parallel
Strand 4	D	224	227	anti-parallel
Strand 5	D	265	268	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	89	first strand
Strand 2	A	71	78	anti-parallel
Strand 3	A	60	68	anti-parallel
Strand 4	A	112	113	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	243	first strand
Strand 2	A	248	252	anti-parallel
Strand 3	A	257	261	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	88	first strand
Strand 2	B	71	78	anti-parallel
Strand 3	B	60	68	anti-parallel
Strand 4	B	112	115	parallel
Strand 5	B	136	139	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	261	first strand
Strand 2	B	248	253	anti-parallel
Strand 3	B	239	244	anti-parallel
Strand 4	B	224	227	anti-parallel
Strand 5	B	265	268	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BW9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BW9