Analysis of interatomic Contacts of Structural Units in PDB entry:
9BWA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BWA entry

There are 2 chains in PDB entry 9BWA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3GLN 275
B
 ILE 3SER 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9BWA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 98Right-handed alpha
Helix 2
AA2
A
101 113Right-handed alpha
Helix 3
AA3
A
114 116Right-handed 310
Helix 4
AA4
A
164 181Right-handed alpha
Helix 5
AA5
A
185 198Right-handed alpha
Helix 6
AA6
A
206 218Right-handed alpha
Helix 7
AA7
A
220 225Right-handed alpha
Helix 8
AA8
B
41 44Right-handed 310
Helix 9
AA9
B
89 97Right-handed alpha
Helix 10
AB1
B
101 113Right-handed alpha
Helix 11
AB2
B
114 116Right-handed 310
Helix 12
AB3
B
164 182Right-handed alpha
Helix 13
AB4
B
185 198Right-handed alpha
Helix 14
AB5
B
206 218Right-handed alpha
Helix 15
AB6
B
220 225Right-handed alpha
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There are 4 sheets in PDB entry 9BWA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 155first strand
Strand 2
A
3 8anti-parallel
Strand 3
A
18 29anti-parallel
Strand 4
A
234 245anti-parallel
Strand 5
A
249 258anti-parallel
Strand 6
A
261 273anti-parallel
Strand 7
B
265 273anti-parallel
Strand 8
B
249 257anti-parallel
Strand 9
B
234 245anti-parallel
Strand 10
B
18 29anti-parallel
Strand 11
B
3 8anti-parallel
Strand 12
B
151 155anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
234 245anti-parallel
Strand 3
A
249 258anti-parallel
Strand 4
A
261 273anti-parallel
Strand 5
B
265 273anti-parallel
Strand 6
B
249 257anti-parallel
Strand 7
B
234 245anti-parallel
Strand 8
B
230 231anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 40first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
62 65anti-parallel
Strand 4
A
69 75anti-parallel
Strand 5
A
119 125anti-parallel
Strand 6
A
133 138anti-parallel
Strand 7
A
146 147anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 40first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
62 65anti-parallel
Strand 4
B
69 75anti-parallel
Strand 5
B
119 125anti-parallel
Strand 6
B
133 138anti-parallel
Strand 7
B
146 147anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il