Analysis of interatomic Contacts of Structural Units in PDB entry:
9BX4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BX4 entry

There are 6 chains in PDB entry 9BX4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 21	GLY 490
B	ASN 21	GLY 490
C	ASN 21	GLY 490
D	ASN 21	GLY 490
E	U 1	U 44
F	U 1	U 44

There are 84 helices in PDB entry 9BX4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	48	Right-handed alpha
Helix 2	AA2	A	52	55	Right-handed 310
Helix 3	AA3	A	56	72	Right-handed alpha
Helix 4	AA4	A	72	81	Right-handed alpha
Helix 5	AA5	A	112	124	Right-handed alpha
Helix 6	AA6	A	129	148	Right-handed alpha
Helix 7	AA7	A	150	157	Right-handed alpha
Helix 8	AA8	A	160	167	Right-handed 310
Helix 9	AA9	A	177	184	Right-handed alpha
Helix 10	AB1	A	185	203	Right-handed alpha
Helix 11	AB2	A	209	230	Right-handed alpha
Helix 12	AB3	A	232	244	Right-handed alpha
Helix 13	AB4	A	250	264	Right-handed alpha
Helix 14	AB5	A	277	287	Right-handed alpha
Helix 15	AB6	A	290	295	Right-handed alpha
Helix 16	AB7	A	301	309	Right-handed alpha
Helix 17	AB8	A	321	335	Right-handed alpha
Helix 18	AB9	A	340	349	Right-handed alpha
Helix 19	AC1	A	354	358	Right-handed 310
Helix 20	AC2	A	394	400	Right-handed alpha
Helix 21	AC3	A	437	451	Right-handed alpha
Helix 22	AC4	B	22	48	Right-handed alpha
Helix 23	AC5	B	52	55	Right-handed 310
Helix 24	AC6	B	56	72	Right-handed alpha
Helix 25	AC7	B	72	81	Right-handed alpha
Helix 26	AC8	B	112	124	Right-handed alpha
Helix 27	AC9	B	129	148	Right-handed alpha
Helix 28	AD1	B	150	157	Right-handed alpha
Helix 29	AD2	B	160	167	Right-handed 310
Helix 30	AD3	B	177	184	Right-handed alpha
Helix 31	AD4	B	185	203	Right-handed alpha
Helix 32	AD5	B	209	230	Right-handed alpha
Helix 33	AD6	B	232	244	Right-handed alpha
Helix 34	AD7	B	250	264	Right-handed alpha
Helix 35	AD8	B	277	287	Right-handed alpha
Helix 36	AD9	B	290	295	Right-handed alpha
Helix 37	AE1	B	301	309	Right-handed alpha
Helix 38	AE2	B	321	335	Right-handed alpha
Helix 39	AE3	B	340	349	Right-handed alpha
Helix 40	AE4	B	354	358	Right-handed 310
Helix 41	AE5	B	421	429	Right-handed alpha
Helix 42	AE6	B	437	451	Right-handed alpha
Helix 43	AE7	C	22	48	Right-handed alpha
Helix 44	AE8	C	52	55	Right-handed 310
Helix 45	AE9	C	56	72	Right-handed alpha
Helix 46	AF1	C	72	81	Right-handed alpha
Helix 47	AF2	C	112	124	Right-handed alpha
Helix 48	AF3	C	129	148	Right-handed alpha
Helix 49	AF4	C	150	157	Right-handed alpha
Helix 50	AF5	C	160	167	Right-handed 310
Helix 51	AF6	C	177	184	Right-handed alpha
Helix 52	AF7	C	185	203	Right-handed alpha
Helix 53	AF8	C	209	230	Right-handed alpha
Helix 54	AF9	C	232	244	Right-handed alpha
Helix 55	AG1	C	250	264	Right-handed alpha
Helix 56	AG2	C	277	287	Right-handed alpha
Helix 57	AG3	C	290	295	Right-handed alpha
Helix 58	AG4	C	301	309	Right-handed alpha
Helix 59	AG5	C	321	335	Right-handed alpha
Helix 60	AG6	C	340	349	Right-handed alpha
Helix 61	AG7	C	354	358	Right-handed 310
Helix 62	AG8	C	394	400	Right-handed alpha
Helix 63	AG9	C	437	451	Right-handed alpha
Helix 64	AH1	D	22	48	Right-handed alpha
Helix 65	AH2	D	52	55	Right-handed 310
Helix 66	AH3	D	56	72	Right-handed alpha
Helix 67	AH4	D	72	81	Right-handed alpha
Helix 68	AH5	D	112	124	Right-handed alpha
Helix 69	AH6	D	129	148	Right-handed alpha
Helix 70	AH7	D	150	157	Right-handed alpha
Helix 71	AH8	D	160	167	Right-handed 310
Helix 72	AH9	D	177	184	Right-handed alpha
Helix 73	AI1	D	185	203	Right-handed alpha
Helix 74	AI2	D	209	230	Right-handed alpha
Helix 75	AI3	D	232	244	Right-handed alpha
Helix 76	AI4	D	250	264	Right-handed alpha
Helix 77	AI5	D	277	287	Right-handed alpha
Helix 78	AI6	D	290	295	Right-handed alpha
Helix 79	AI7	D	301	309	Right-handed alpha
Helix 80	AI8	D	321	335	Right-handed alpha
Helix 81	AI9	D	340	349	Right-handed alpha
Helix 82	AJ1	D	354	358	Right-handed 310
Helix 83	AJ2	D	421	429	Right-handed alpha
Helix 84	AJ3	D	437	451	Right-handed alpha

There are 12 sheets in PDB entry 9BX4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	100	first strand
Strand 2	A	103	108	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	316	first strand
Strand 2	A	375	378	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	386	first strand
Strand 2	A	464	465	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	100	first strand
Strand 2	B	103	108	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	316	first strand
Strand 2	B	375	378	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	386	first strand
Strand 2	B	464	465	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	100	first strand
Strand 2	C	103	108	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	316	first strand
Strand 2	C	375	378	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	386	first strand
Strand 2	C	464	465	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	100	first strand
Strand 2	D	103	108	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	316	first strand
Strand 2	D	375	378	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	385	386	first strand
Strand 2	D	464	465	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BX4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BX4