Analysis of interatomic Contacts of Structural Units in PDB entry:
9BXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BXM entry

There are 2 chains in PDB entry 9BXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 10ILE 251
B
 ASN 7ILE 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9BXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 24Right-handed alpha
Helix 2
AA2
A
32 45Right-handed alpha
Helix 3
AA3
A
61 68Right-handed alpha
Helix 4
AA4
A
80 94Right-handed alpha
Helix 5
AA5
A
115 124Right-handed 310
Helix 6
AA6
A
151 155Right-handed 310
Helix 7
AA7
A
157 163Right-handed alpha
Helix 8
AA8
A
164 167Right-handed 310
Helix 9
AA9
A
189 193Right-handed 310
Helix 10
AB1
A
206 216Right-handed alpha
Helix 11
AB2
B
12 24Right-handed alpha
Helix 12
AB3
B
32 45Right-handed alpha
Helix 13
AB4
B
61 68Right-handed alpha
Helix 14
AB5
B
80 94Right-handed alpha
Helix 15
AB6
B
115 124Right-handed 310
Helix 16
AB7
B
132 136Right-handed 310
Helix 17
AB8
B
151 155Right-handed 310
Helix 18
AB9
B
157 163Right-handed alpha
Helix 19
AC1
B
164 167Right-handed 310
Helix 20
AC2
B
189 193Right-handed 310
Helix 21
AC3
B
206 216Right-handed alpha
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There are 6 sheets in PDB entry 9BXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 130first strand
Strand 2
A
73 78parallel
Strand 3
A
52 56parallel
Strand 4
A
143 149parallel
Strand 5
A
169 179parallel
Strand 6
A
238 250anti-parallel
Strand 7
A
219 232anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 101first strand
Strand 2
A
107 113anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
204 205anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
95 101parallel
Strand 3
B
107 113anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 130first strand
Strand 2
B
73 78parallel
Strand 3
B
52 56parallel
Strand 4
B
143 149parallel
Strand 5
B
169 179parallel
Strand 6
B
238 250anti-parallel
Strand 7
B
219 232anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
B
204 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il