Analysis of interatomic Contacts of Structural Units in PDB entry:
9BYB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BYB entry

There are 2 chains in PDB entry 9BYB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 29	LEU 910
B	PHE 29	LEU 910

There are 80 helices in PDB entry 9BYB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	61	Right-handed alpha
Helix 2	AA2	A	73	80	Right-handed alpha
Helix 3	AA3	A	83	103	Right-handed alpha
Helix 4	AA4	A	106	110	Right-handed 310
Helix 5	AA5	A	111	139	Right-handed alpha
Helix 6	AA6	A	164	168	Right-handed 310
Helix 7	AA7	A	221	225	Right-handed 310
Helix 8	AA8	A	247	250	Right-handed 310
Helix 9	AA9	A	251	260	Right-handed alpha
Helix 10	AB1	A	267	298	Right-handed alpha
Helix 11	AB2	A	301	317	Right-handed alpha
Helix 12	AB3	A	320	338	Right-handed alpha
Helix 13	AB4	A	347	354	Right-handed alpha
Helix 14	AB5	A	384	397	Right-handed alpha
Helix 15	AB6	A	403	415	Right-handed alpha
Helix 16	AB7	A	419	430	Right-handed alpha
Helix 17	AB8	A	452	456	Right-handed 310
Helix 18	AB9	A	467	475	Right-handed alpha
Helix 19	AC1	A	488	505	Right-handed alpha
Helix 20	AC2	A	525	530	Right-handed 310
Helix 21	AC3	A	547	558	Right-handed alpha
Helix 22	AC4	A	569	581	Right-handed alpha
Helix 23	AC5	A	590	596	Right-handed alpha
Helix 24	AC6	A	597	607	Right-handed alpha
Helix 25	AC7	A	615	629	Right-handed alpha
Helix 26	AC8	A	639	641	Right-handed 310
Helix 27	AC9	A	642	649	Right-handed alpha
Helix 28	AD1	A	659	666	Right-handed alpha
Helix 29	AD2	A	675	707	Right-handed alpha
Helix 30	AD3	A	708	714	Right-handed alpha
Helix 31	AD4	A	723	734	Right-handed alpha
Helix 32	AD5	A	740	744	Right-handed 310
Helix 33	AD6	A	759	765	Right-handed alpha
Helix 34	AD7	A	774	784	Right-handed alpha
Helix 35	AD8	A	807	815	Right-handed alpha
Helix 36	AD9	A	818	827	Right-handed alpha
Helix 37	AE1	A	828	833	Right-handed alpha
Helix 38	AE2	A	846	858	Right-handed alpha
Helix 39	AE3	A	865	869	Right-handed 310
Helix 40	AE4	A	879	904	Right-handed alpha
Helix 41	AE5	B	50	61	Right-handed alpha
Helix 42	AE6	B	73	80	Right-handed alpha
Helix 43	AE7	B	83	101	Right-handed alpha
Helix 44	AE8	B	105	110	Right-handed alpha
Helix 45	AE9	B	114	139	Right-handed alpha
Helix 46	AF1	B	164	168	Right-handed 310
Helix 47	AF2	B	221	225	Right-handed 310
Helix 48	AF3	B	247	250	Right-handed 310
Helix 49	AF4	B	251	260	Right-handed alpha
Helix 50	AF5	B	267	298	Right-handed alpha
Helix 51	AF6	B	301	317	Right-handed alpha
Helix 52	AF7	B	320	337	Right-handed alpha
Helix 53	AF8	B	345	347	Right-handed 310
Helix 54	AF9	B	348	354	Right-handed alpha
Helix 55	AG1	B	384	397	Right-handed alpha
Helix 56	AG2	B	403	416	Right-handed alpha
Helix 57	AG3	B	420	426	Right-handed alpha
Helix 58	AG4	B	427	429	Right-handed 310
Helix 59	AG5	B	468	475	Right-handed alpha
Helix 60	AG6	B	488	504	Right-handed alpha
Helix 61	AG7	B	526	530	Right-handed 310
Helix 62	AG8	B	547	558	Right-handed alpha
Helix 63	AG9	B	569	576	Right-handed alpha
Helix 64	AH1	B	589	595	Right-handed alpha
Helix 65	AH2	B	597	607	Right-handed alpha
Helix 66	AH3	B	615	629	Right-handed alpha
Helix 67	AH4	B	639	641	Right-handed 310
Helix 68	AH5	B	642	649	Right-handed alpha
Helix 69	AH6	B	659	666	Right-handed alpha
Helix 70	AH7	B	676	709	Right-handed alpha
Helix 71	AH8	B	723	734	Right-handed alpha
Helix 72	AH9	B	735	737	Right-handed 310
Helix 73	AI1	B	740	744	Right-handed 310
Helix 74	AI2	B	758	769	Right-handed alpha
Helix 75	AI3	B	770	787	Right-handed alpha
Helix 76	AI4	B	788	794	Right-handed alpha
Helix 77	AI5	B	805	827	Right-handed alpha
Helix 78	AI6	B	828	833	Right-handed alpha
Helix 79	AI7	B	846	861	Right-handed alpha
Helix 80	AI8	B	879	906	Right-handed alpha

There are 12 sheets in PDB entry 9BYB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	155	first strand
Strand 2	A	159	163	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	176	first strand
Strand 2	A	240	246	anti-parallel
Strand 3	A	185	190	anti-parallel
Strand 4	A	228	229	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	194	197	anti-parallel
Strand 3	A	234	237	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	668	670	anti-parallel
Strand 3	A	651	654	parallel
Strand 4	A	633	637	parallel
Strand 5	A	357	360	parallel
Strand 6	A	561	563	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	378	first strand
Strand 2	A	533	541	anti-parallel
Strand 3	A	508	517	anti-parallel
Strand 4	A	460	466	anti-parallel
Strand 5	A	444	449	anti-parallel
Strand 6	A	432	436	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	378	first strand
Strand 2	A	533	541	anti-parallel
Strand 3	A	477	480	parallel
Strand 4	A	483	486	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	155	first strand
Strand 2	B	159	163	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	176	first strand
Strand 2	B	240	243	anti-parallel
Strand 3	B	187	190	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	197	first strand
Strand 2	B	207	210	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	561	564	first strand
Strand 2	B	357	360	parallel
Strand 3	B	633	637	parallel
Strand 4	B	651	654	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	375	first strand
Strand 2	B	539	541	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	439	first strand
Strand 2	B	444	453	anti-parallel
Strand 3	B	456	467	anti-parallel
Strand 4	B	510	517	anti-parallel
Strand 5	B	533	536	anti-parallel
Strand 6	B	477	480	parallel
Strand 7	B	483	486	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BYB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BYB