Analysis of interatomic Contacts of Structural Units in PDB entry:
9BYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BYH entry

There are 4 chains in PDB entry 9BYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6LYS 688
B
 VAL 6LYS 688
C
 LYS 309PHE 322
D
 LYS 309PHE 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 9BYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed alpha
Helix 2
AA2
A
25 39Right-handed alpha
Helix 3
AA3
A
50 61Right-handed alpha
Helix 4
AA4
A
65 71Right-handed alpha
Helix 5
AA5
A
73 87Right-handed alpha
Helix 6
AA6
A
93 104Right-handed alpha
Helix 7
AA7
A
117 131Right-handed alpha
Helix 8
AA8
A
133 146Right-handed alpha
Helix 9
AA9
A
152 159Right-handed alpha
Helix 10
AB1
A
178 195Right-handed alpha
Helix 11
AB2
A
221 237Right-handed alpha
Helix 12
AB3
A
257 264Right-handed alpha
Helix 13
AB4
A
285 294Right-handed alpha
Helix 14
AB5
A
302 311Right-handed alpha
Helix 15
AB6
A
313 317Right-handed 310
Helix 16
AB7
A
318 329Right-handed alpha
Helix 17
AB8
A
338 354Right-handed alpha
Helix 18
AB9
A
361 366Right-handed alpha
Helix 19
AC1
A
416 422Right-handed alpha
Helix 20
AC2
A
424 442Right-handed alpha
Helix 21
AC3
A
448 459Right-handed alpha
Helix 22
AC4
A
467 475Right-handed alpha
Helix 23
AC5
A
481 511Right-handed alpha
Helix 24
AC6
A
520 525Right-handed alpha
Helix 25
AC7
A
528 534Right-handed alpha
Helix 26
AC8
A
540 547Right-handed alpha
Helix 27
AC9
A
554 569Right-handed alpha
Helix 28
AD1
A
583 588Right-handed alpha
Helix 29
AD2
A
633 646Right-handed alpha
Helix 30
AD3
A
663 678Right-handed alpha
Helix 31
AD4
B
7 15Right-handed alpha
Helix 32
AD5
B
25 40Right-handed alpha
Helix 33
AD6
B
40 45Right-handed alpha
Helix 34
AD7
B
50 61Right-handed alpha
Helix 35
AD8
B
65 71Right-handed alpha
Helix 36
AD9
B
73 87Right-handed alpha
Helix 37
AE1
B
93 104Right-handed alpha
Helix 38
AE2
B
117 131Right-handed alpha
Helix 39
AE3
B
133 146Right-handed alpha
Helix 40
AE4
B
152 159Right-handed alpha
Helix 41
AE5
B
178 195Right-handed alpha
Helix 42
AE6
B
221 237Right-handed alpha
Helix 43
AE7
B
238 242Right-handed 310
Helix 44
AE8
B
257 264Right-handed alpha
Helix 45
AE9
B
285 295Right-handed alpha
Helix 46
AF1
B
302 311Right-handed alpha
Helix 47
AF2
B
313 317Right-handed 310
Helix 48
AF3
B
318 329Right-handed alpha
Helix 49
AF4
B
338 354Right-handed alpha
Helix 50
AF5
B
361 366Right-handed alpha
Helix 51
AF6
B
416 422Right-handed alpha
Helix 52
AF7
B
424 442Right-handed alpha
Helix 53
AF8
B
448 459Right-handed alpha
Helix 54
AF9
B
467 475Right-handed alpha
Helix 55
AG1
B
481 511Right-handed alpha
Helix 56
AG2
B
520 525Right-handed alpha
Helix 57
AG3
B
528 534Right-handed alpha
Helix 58
AG4
B
540 547Right-handed alpha
Helix 59
AG5
B
554 569Right-handed alpha
Helix 60
AG6
B
583 588Right-handed alpha
Helix 61
AG7
B
633 646Right-handed alpha
Helix 62
AG8
B
663 678Right-handed alpha
Helix 63
AG9
C
316 321Right-handed 310
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There are 11 sheets in PDB entry 9BYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
23 24anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
411 415anti-parallel
Strand 3
A
462 466parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
198 202parallel
Strand 3
A
247 252parallel
Strand 4
A
278 284parallel
Strand 5
A
357 360parallel
Strand 6
A
681 682anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 301first strand
Strand 2
A
334 337anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 606first strand
Strand 2
A
609 614anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 658first strand
Strand 2
A
685 687parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
408 415anti-parallel
Strand 3
B
461 466parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
408 415anti-parallel
Strand 3
B
170 174anti-parallel
Strand 4
B
198 202parallel
Strand 5
B
247 252parallel
Strand 6
B
278 284parallel
Strand 7
B
357 360parallel
Strand 8
B
681 682anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 301first strand
Strand 2
B
334 337anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
601 606first strand
Strand 2
B
609 614anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
656 659first strand
Strand 2
B
685 688parallel
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