Analysis of interatomic Contacts of Structural Units in PDB entry:
9BYL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BYL entry

There are 5 chains in PDB entry 9BYL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 6	LYS 688
B	VAL 6	LYS 688
C	ASP 16	PHE 322
D	ASP 16	PHE 322
E	VAL 19	LEU 104

There are100 helices in PDB entry 9BYL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	15	Right-handed alpha
Helix 2	AA2	A	25	39	Right-handed alpha
Helix 3	AA3	A	50	61	Right-handed alpha
Helix 4	AA4	A	65	71	Right-handed alpha
Helix 5	AA5	A	73	87	Right-handed alpha
Helix 6	AA6	A	93	104	Right-handed alpha
Helix 7	AA7	A	117	131	Right-handed alpha
Helix 8	AA8	A	133	146	Right-handed alpha
Helix 9	AA9	A	152	159	Right-handed alpha
Helix 10	AB1	A	178	195	Right-handed alpha
Helix 11	AB2	A	221	237	Right-handed alpha
Helix 12	AB3	A	257	264	Right-handed alpha
Helix 13	AB4	A	285	294	Right-handed alpha
Helix 14	AB5	A	302	311	Right-handed alpha
Helix 15	AB6	A	313	317	Right-handed 310
Helix 16	AB7	A	318	329	Right-handed alpha
Helix 17	AB8	A	338	354	Right-handed alpha
Helix 18	AB9	A	361	366	Right-handed alpha
Helix 19	AC1	A	416	422	Right-handed alpha
Helix 20	AC2	A	424	442	Right-handed alpha
Helix 21	AC3	A	448	459	Right-handed alpha
Helix 22	AC4	A	467	475	Right-handed alpha
Helix 23	AC5	A	481	511	Right-handed alpha
Helix 24	AC6	A	520	525	Right-handed alpha
Helix 25	AC7	A	528	534	Right-handed alpha
Helix 26	AC8	A	540	547	Right-handed alpha
Helix 27	AC9	A	554	569	Right-handed alpha
Helix 28	AD1	A	583	588	Right-handed alpha
Helix 29	AD2	A	633	646	Right-handed alpha
Helix 30	AD3	A	663	678	Right-handed alpha
Helix 31	AD4	B	7	15	Right-handed alpha
Helix 32	AD5	B	25	40	Right-handed alpha
Helix 33	AD6	B	40	45	Right-handed alpha
Helix 34	AD7	B	50	61	Right-handed alpha
Helix 35	AD8	B	65	71	Right-handed alpha
Helix 36	AD9	B	73	87	Right-handed alpha
Helix 37	AE1	B	93	104	Right-handed alpha
Helix 38	AE2	B	117	131	Right-handed alpha
Helix 39	AE3	B	133	146	Right-handed alpha
Helix 40	AE4	B	152	159	Right-handed alpha
Helix 41	AE5	B	178	195	Right-handed alpha
Helix 42	AE6	B	221	237	Right-handed alpha
Helix 43	AE7	B	238	242	Right-handed 310
Helix 44	AE8	B	257	264	Right-handed alpha
Helix 45	AE9	B	285	295	Right-handed alpha
Helix 46	AF1	B	302	311	Right-handed alpha
Helix 47	AF2	B	313	317	Right-handed 310
Helix 48	AF3	B	318	329	Right-handed alpha
Helix 49	AF4	B	338	354	Right-handed alpha
Helix 50	AF5	B	361	366	Right-handed alpha
Helix 51	AF6	B	416	422	Right-handed alpha
Helix 52	AF7	B	424	442	Right-handed alpha
Helix 53	AF8	B	448	459	Right-handed alpha
Helix 54	AF9	B	467	475	Right-handed alpha
Helix 55	AG1	B	481	511	Right-handed alpha
Helix 56	AG2	B	520	525	Right-handed alpha
Helix 57	AG3	B	528	534	Right-handed alpha
Helix 58	AG4	B	540	547	Right-handed alpha
Helix 59	AG5	B	554	569	Right-handed alpha
Helix 60	AG6	B	583	588	Right-handed alpha
Helix 61	AG7	B	633	646	Right-handed alpha
Helix 62	AG8	B	663	678	Right-handed alpha
Helix 63	AG9	C	17	28	Right-handed alpha
Helix 64	AH1	C	31	35	Right-handed 310
Helix 65	AH2	C	37	39	Right-handed 310
Helix 66	AH3	C	40	46	Right-handed alpha
Helix 67	AH4	C	48	72	Right-handed alpha
Helix 68	AH5	C	72	81	Right-handed alpha
Helix 69	AH6	C	83	100	Right-handed alpha
Helix 70	AH7	C	100	113	Right-handed alpha
Helix 71	AH8	C	114	128	Right-handed alpha
Helix 72	AH9	C	128	144	Right-handed alpha
Helix 73	AI1	C	149	166	Right-handed alpha
Helix 74	AI2	C	168	180	Right-handed alpha
Helix 75	AI3	C	184	214	Right-handed alpha
Helix 76	AI4	C	217	248	Right-handed alpha
Helix 77	AI5	C	249	251	Right-handed 310
Helix 78	AI6	C	252	271	Right-handed alpha
Helix 79	AI7	C	283	289	Right-handed alpha
Helix 80	AI8	C	316	321	Right-handed 310
Helix 81	AI9	D	17	28	Right-handed alpha
Helix 82	AJ1	D	31	35	Right-handed 310
Helix 83	AJ2	D	37	39	Right-handed 310
Helix 84	AJ3	D	40	45	Right-handed alpha
Helix 85	AJ4	D	48	72	Right-handed alpha
Helix 86	AJ5	D	72	81	Right-handed alpha
Helix 87	AJ6	D	83	100	Right-handed alpha
Helix 88	AJ7	D	100	113	Right-handed alpha
Helix 89	AJ8	D	114	128	Right-handed alpha
Helix 90	AJ9	D	128	144	Right-handed alpha
Helix 91	AK1	D	149	166	Right-handed alpha
Helix 92	AK2	D	168	180	Right-handed alpha
Helix 93	AK3	D	184	214	Right-handed alpha
Helix 94	AK4	D	217	248	Right-handed alpha
Helix 95	AK5	D	249	251	Right-handed 310
Helix 96	AK6	D	252	271	Right-handed alpha
Helix 97	AK7	D	283	290	Right-handed alpha
Helix 98	AK8	E	29	47	Right-handed alpha
Helix 99	AK9	E	60	67	Right-handed alpha
Helix 100	AL1	E	92	102	Right-handed alpha

There are 12 sheets in PDB entry 9BYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	23	24	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	151	first strand
Strand 2	A	411	415	anti-parallel
Strand 3	A	462	466	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	174	first strand
Strand 2	A	198	202	parallel
Strand 3	A	247	252	parallel
Strand 4	A	278	284	parallel
Strand 5	A	357	360	parallel
Strand 6	A	681	682	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	334	337	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	606	first strand
Strand 2	A	609	614	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	658	first strand
Strand 2	A	685	687	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	408	415	anti-parallel
Strand 3	B	461	466	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	408	415	anti-parallel
Strand 3	B	170	174	anti-parallel
Strand 4	B	198	202	parallel
Strand 5	B	247	252	parallel
Strand 6	B	278	284	parallel
Strand 7	B	357	360	parallel
Strand 8	B	681	682	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	334	337	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	601	606	first strand
Strand 2	B	609	614	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	659	first strand
Strand 2	B	685	688	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	56	first strand
Strand 2	E	20	25	parallel
Strand 3	E	74	79	anti-parallel
Strand 4	E	82	88	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BYL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BYL