Analysis of interatomic Contacts of Structural Units in PDB entry:
9BYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BYU entry

There is 1 chain in PDB entry 9BYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1LYS 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9BYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 52Right-handed alpha
Helix 2
AA2
A
52 61Right-handed alpha
Helix 3
AA3
A
83 87Right-handed 310
Helix 4
AA4
A
91 108Right-handed alpha
Helix 5
AA5
A
121 134Right-handed alpha
Helix 6
AA6
A
154 156Right-handed 310
Helix 7
AA7
A
157 165Right-handed alpha
Helix 8
AA8
A
168 180Right-handed alpha
Helix 9
AA9
A
181 184Right-handed 310
Helix 10
AB1
A
202 220Right-handed alpha
Helix 11
AB2
A
288 299Right-handed alpha
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There are 2 sheets in PDB entry 9BYU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
63 67anti-parallel
Strand 4
A
31 37parallel
Strand 5
A
110 120parallel
Strand 6
A
140 144parallel
Strand 7
A
189 194parallel
Strand 8
A
258 265parallel
Strand 9
A
245 252anti-parallel
Strand 10
A
234 239anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
282 283parallel
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