Analysis of interatomic Contacts of Structural Units in PDB entry:
9BZ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BZ4 entry

There are 3 chains in PDB entry 9BZ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 588	ASN 1044
B	LYS 588	ASN 1044
C	LYS 588	PRO 951

There are 77 helices in PDB entry 9BZ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	678	680	Right-handed 310
Helix 2	AA2	A	719	722	Right-handed 310
Helix 3	AA3	A	723	731	Right-handed alpha
Helix 4	AA4	A	735	745	Right-handed alpha
Helix 5	AA5	A	748	763	Right-handed alpha
Helix 6	AA6	A	765	780	Right-handed alpha
Helix 7	AA7	A	792	806	Right-handed alpha
Helix 8	AA8	A	806	823	Right-handed alpha
Helix 9	AA9	A	840	863	Right-handed alpha
Helix 10	AB1	A	864	866	Right-handed 310
Helix 11	AB2	A	867	885	Right-handed alpha
Helix 12	AB3	A	890	901	Right-handed alpha
Helix 13	AB4	A	904	911	Right-handed alpha
Helix 14	AB5	A	923	942	Right-handed alpha
Helix 15	AB6	A	950	955	Right-handed 310
Helix 16	AB7	A	956	975	Right-handed alpha
Helix 17	AB8	A	990	1005	Right-handed alpha
Helix 18	AB9	A	1005	1014	Right-handed alpha
Helix 19	AC1	A	1019	1043	Right-handed alpha
Helix 20	AC2	B	678	680	Right-handed 310
Helix 21	AC3	B	719	722	Right-handed 310
Helix 22	AC4	B	723	731	Right-handed alpha
Helix 23	AC5	B	735	745	Right-handed alpha
Helix 24	AC6	B	748	763	Right-handed alpha
Helix 25	AC7	B	765	781	Right-handed alpha
Helix 26	AC8	B	792	806	Right-handed alpha
Helix 27	AC9	B	806	823	Right-handed alpha
Helix 28	AD1	B	840	863	Right-handed alpha
Helix 29	AD2	B	864	866	Right-handed 310
Helix 30	AD3	B	867	885	Right-handed alpha
Helix 31	AD4	B	890	901	Right-handed alpha
Helix 32	AD5	B	904	911	Right-handed alpha
Helix 33	AD6	B	923	942	Right-handed alpha
Helix 34	AD7	B	950	955	Right-handed 310
Helix 35	AD8	B	956	962	Right-handed alpha
Helix 36	AD9	B	963	975	Right-handed alpha
Helix 37	AE1	B	990	1005	Right-handed alpha
Helix 38	AE2	B	1005	1014	Right-handed alpha
Helix 39	AE3	B	1019	1042	Right-handed alpha
Helix 40	AE4	C	678	680	Right-handed 310
Helix 41	AE5	C	719	722	Right-handed 310
Helix 42	AE6	C	723	731	Right-handed alpha
Helix 43	AE7	C	735	745	Right-handed alpha
Helix 44	AE8	C	749	763	Right-handed alpha
Helix 45	AE9	C	765	781	Right-handed alpha
Helix 46	AF1	C	783	787	Right-handed 310
Helix 47	AF2	C	792	806	Right-handed alpha
Helix 48	AF3	C	806	824	Right-handed alpha
Helix 49	AF4	C	840	861	Right-handed alpha
Helix 50	AF5	C	862	866	Right-handed 310
Helix 51	AF6	C	867	885	Right-handed alpha
Helix 52	AF7	C	888	901	Right-handed alpha
Helix 53	AF8	C	904	911	Right-handed alpha
Helix 54	AF9	C	923	942	Right-handed alpha
Helix 55	AG1	C	953	955	Right-handed 310
Helix 56	AG2	C	956	975	Right-handed alpha
Helix 57	AG3	C	990	1005	Right-handed alpha
Helix 58	AG4	C	1005	1014	Right-handed alpha
Helix 59	AG5	C	1019	1043	Right-handed alpha
Helix 60	AG6	D	678	680	Right-handed 310
Helix 61	AG7	D	719	722	Right-handed 310
Helix 62	AG8	D	723	731	Right-handed alpha
Helix 63	AG9	D	735	745	Right-handed alpha
Helix 64	AH1	D	748	763	Right-handed alpha
Helix 65	AH2	D	765	781	Right-handed alpha
Helix 66	AH3	D	792	806	Right-handed alpha
Helix 67	AH4	D	806	823	Right-handed alpha
Helix 68	AH5	D	843	861	Right-handed alpha
Helix 69	AH6	D	867	885	Right-handed alpha
Helix 70	AH7	D	888	901	Right-handed alpha
Helix 71	AH8	D	905	911	Right-handed alpha
Helix 72	AH9	D	925	942	Right-handed alpha
Helix 73	AI1	D	953	955	Right-handed 310
Helix 74	AI2	D	956	975	Right-handed alpha
Helix 75	AI3	D	990	1005	Right-handed alpha
Helix 76	AI4	D	1005	1014	Right-handed alpha
Helix 77	AI5	D	1019	1042	Right-handed alpha

There are 8 sheets in PDB entry 9BZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	645	first strand
Strand 2	A	591	604	anti-parallel
Strand 3	A	705	717	anti-parallel
Strand 4	A	685	691	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	627	first strand
Strand 2	A	614	620	anti-parallel
Strand 3	A	653	660	anti-parallel
Strand 4	A	669	676	anti-parallel
Strand 5	A	693	694	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	645	first strand
Strand 2	B	591	604	anti-parallel
Strand 3	B	705	717	anti-parallel
Strand 4	B	686	691	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	627	first strand
Strand 2	B	614	620	anti-parallel
Strand 3	B	653	660	anti-parallel
Strand 4	B	669	676	anti-parallel
Strand 5	B	693	694	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	637	645	first strand
Strand 2	C	591	604	anti-parallel
Strand 3	C	705	717	anti-parallel
Strand 4	C	685	691	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	623	627	first strand
Strand 2	C	614	620	anti-parallel
Strand 3	C	653	660	anti-parallel
Strand 4	C	671	676	anti-parallel
Strand 5	C	693	694	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	637	644	first strand
Strand 2	D	591	604	anti-parallel
Strand 3	D	705	717	anti-parallel
Strand 4	D	686	691	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	623	627	first strand
Strand 2	D	614	620	anti-parallel
Strand 3	D	653	660	anti-parallel
Strand 4	D	667	676	anti-parallel
Strand 5	D	693	694	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BZ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BZ4