Analysis of interatomic Contacts of Structural Units in PDB entry:
9C0F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C0F entry

There are 4 chains in PDB entry 9C0F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	C 1	G 35
B	C -35	G -1
C	PRO 78	TYR 572
D	ASP 10	TYR 572

There are 39 helices in PDB entry 9C0F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	98	103	Right-handed alpha
Helix 2	AA2	C	107	125	Right-handed alpha
Helix 3	AA3	C	142	156	Right-handed alpha
Helix 4	AA4	C	163	169	Right-handed 310
Helix 5	AA5	C	176	181	Right-handed alpha
Helix 6	AA6	C	184	195	Right-handed alpha
Helix 7	AA7	C	213	227	Right-handed alpha
Helix 8	AA8	C	289	297	Right-handed alpha
Helix 9	AA9	C	298	300	Right-handed 310
Helix 10	AB1	C	314	323	Right-handed alpha
Helix 11	AB2	C	341	346	Right-handed 310
Helix 12	AB3	C	400	409	Right-handed alpha
Helix 13	AB4	C	410	415	Right-handed alpha
Helix 14	AB5	C	416	421	Right-handed 310
Helix 15	AB6	C	430	455	Right-handed alpha
Helix 16	AB7	C	460	473	Right-handed alpha
Helix 17	AB8	C	505	510	Right-handed 310
Helix 18	AB9	C	534	539	Right-handed alpha
Helix 19	AC1	C	560	569	Right-handed alpha
Helix 20	AC2	D	97	103	Right-handed alpha
Helix 21	AC3	D	107	125	Right-handed alpha
Helix 22	AC4	D	126	130	Right-handed 310
Helix 23	AC5	D	142	156	Right-handed alpha
Helix 24	AC6	D	157	159	Right-handed 310
Helix 25	AC7	D	163	167	Right-handed 310
Helix 26	AC8	D	171	175	Right-handed 310
Helix 27	AC9	D	184	194	Right-handed alpha
Helix 28	AD1	D	213	228	Right-handed alpha
Helix 29	AD2	D	249	253	Right-handed 310
Helix 30	AD3	D	296	300	Right-handed 310
Helix 31	AD4	D	316	324	Right-handed alpha
Helix 32	AD5	D	339	343	Right-handed 310
Helix 33	AD6	D	400	408	Right-handed alpha
Helix 34	AD7	D	413	418	Right-handed alpha
Helix 35	AD8	D	419	426	Right-handed 310
Helix 36	AD9	D	430	455	Right-handed alpha
Helix 37	AE1	D	460	473	Right-handed alpha
Helix 38	AE2	D	534	540	Right-handed alpha
Helix 39	AE3	D	560	569	Right-handed alpha

There are 9 sheets in PDB entry 9C0F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	89	first strand
Strand 2	C	228	229	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	280	first strand
Strand 2	C	261	269	anti-parallel
Strand 3	C	233	242	anti-parallel
Strand 4	C	305	308	parallel
Strand 5	C	327	330	parallel
Strand 6	C	370	375	anti-parallel
Strand 7	C	360	366	anti-parallel
Strand 8	C	354	357	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	386	first strand
Strand 2	C	395	399	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	520	first strand
Strand 2	C	548	550	anti-parallel
Strand 3	C	555	557	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	532	533	first strand
Strand 2	C	545	546	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	280	first strand
Strand 2	D	264	269	anti-parallel
Strand 3	D	233	237	anti-parallel
Strand 4	D	305	308	parallel
Strand 5	D	327	331	parallel
Strand 6	D	370	375	anti-parallel
Strand 7	D	360	366	anti-parallel
Strand 8	D	352	357	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	382	384	first strand
Strand 2	D	397	399	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	518	520	first strand
Strand 2	D	548	550	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	532	533	first strand
Strand 2	D	545	546	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C0F

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C0F