Analysis of interatomic Contacts of Structural Units in PDB entry:
9C0H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C0H entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 9C0H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 207ARG 211
A
 PHE 213ASN 216
A
 MET 218SER 1212
B
 THR 207ARG 211
B
 PHE 213ASN 216
B
 MET 218SER 1212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 9C0H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
207 211Right-handed 310
Helix 2
AA2
A
223 228Right-handed 310
Helix 3
AA3
A
242 248Right-handed alpha
Helix 4
AA4
A
286 291Right-handed alpha
Helix 5
AA5
A
291 300Right-handed alpha
Helix 6
AA6
A
302 306Right-handed 310
Helix 7
AA7
A
307 315Right-handed alpha
Helix 8
AA8
A
316 343Right-handed alpha
Helix 9
AA9
A
351 361Right-handed alpha
Helix 10
AB1
A
361 398Right-handed alpha
Helix 11
AB2
A
404 427Right-handed alpha
Helix 12
AB3
A
427 454Right-handed alpha
Helix 13
AB4
A
469 477Right-handed alpha
Helix 14
AB5
A
486 495Right-handed alpha
Helix 15
AB6
A
496 498Right-handed 310
Helix 16
AB7
A
507 511Right-handed 310
Helix 17
AB8
A
517 542Right-handed alpha
Helix 18
AB9
A
591 597Right-handed alpha
Helix 19
AC1
A
599 632Right-handed alpha
Helix 20
AC2
A
635 643Right-handed 310
Helix 21
AC3
A
651 669Right-handed alpha
Helix 22
AC4
A
674 699Right-handed alpha
Helix 23
AC5
A
712 730Right-handed alpha
Helix 24
AC6
A
731 753Right-handed alpha
Helix 25
AC7
A
760 778Right-handed alpha
Helix 26
AC8
A
783 787Right-handed 310
Helix 27
AC9
A
801 811Right-handed alpha
Helix 28
AD1
A
827 849Right-handed alpha
Helix 29
AD2
A
862 874Right-handed alpha
Helix 30
AD3
A
896 913Right-handed alpha
Helix 31
AD4
A
1034 1046Right-handed alpha
Helix 32
AD5
A
1064 1079Right-handed alpha
Helix 33
AD6
A
1097 1109Right-handed alpha
Helix 34
AD7
A
1110 1112Right-handed 310
Helix 35
AD8
A
1114 1119Right-handed 310
Helix 36
AD9
A
1120 1129Right-handed alpha
Helix 37
AE1
A
1135 1142Right-handed alpha
Helix 38
AE2
A
1142 1160Right-handed alpha
Helix 39
AE3
A
1179 1192Right-handed alpha
Helix 40
AE4
B
207 211Right-handed 310
Helix 41
AE5
B
223 227Right-handed 310
Helix 42
AE6
B
242 248Right-handed alpha
Helix 43
AE7
B
286 291Right-handed alpha
Helix 44
AE8
B
291 300Right-handed alpha
Helix 45
AE9
B
307 315Right-handed alpha
Helix 46
AF1
B
316 343Right-handed alpha
Helix 47
AF2
B
351 361Right-handed alpha
Helix 48
AF3
B
361 398Right-handed alpha
Helix 49
AF4
B
404 427Right-handed alpha
Helix 50
AF5
B
427 454Right-handed alpha
Helix 51
AF6
B
469 477Right-handed alpha
Helix 52
AF7
B
486 499Right-handed alpha
Helix 53
AF8
B
504 511Right-handed 310
Helix 54
AF9
B
516 542Right-handed alpha
Helix 55
AG1
B
566 571Right-handed alpha
Helix 56
AG2
B
591 597Right-handed alpha
Helix 57
AG3
B
599 632Right-handed alpha
Helix 58
AG4
B
635 643Right-handed 310
Helix 59
AG5
B
651 669Right-handed alpha
Helix 60
AG6
B
674 699Right-handed alpha
Helix 61
AG7
B
712 730Right-handed alpha
Helix 62
AG8
B
731 753Right-handed alpha
Helix 63
AG9
B
760 778Right-handed alpha
Helix 64
AH1
B
783 787Right-handed 310
Helix 65
AH2
B
801 811Right-handed alpha
Helix 66
AH3
B
827 849Right-handed alpha
Helix 67
AH4
B
862 874Right-handed alpha
Helix 68
AH5
B
891 895Right-handed 310
Helix 69
AH6
B
896 913Right-handed alpha
Helix 70
AH7
B
1034 1045Right-handed alpha
Helix 71
AH8
B
1064 1079Right-handed alpha
Helix 72
AH9
B
1097 1109Right-handed alpha
Helix 73
AI1
B
1110 1112Right-handed 310
Helix 74
AI2
B
1114 1118Right-handed 310
Helix 75
AI3
B
1119 1120Right-handed 310
Helix 76
AI4
B
1121 1129Right-handed alpha
Helix 77
AI5
B
1135 1142Right-handed alpha
Helix 78
AI6
B
1142 1160Right-handed alpha
Helix 79
AI7
B
1179 1192Right-handed alpha
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There are 3 sheets in PDB entry 9C0H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 859first strand
Strand 2
A
818 824parallel
Strand 3
A
791 793parallel
Strand 4
A
883 887parallel
Strand 5
A
916 921parallel
Strand 6
A
1197 1201anti-parallel
Strand 7
A
1165 1169parallel
Strand 8
A
1023 1027parallel
Strand 9
A
1053 1059parallel
Strand 10
A
1086 1089parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
547 548first strand
Strand 2
B
584 585anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
854 859first strand
Strand 2
B
818 824parallel
Strand 3
B
791 793parallel
Strand 4
B
883 887parallel
Strand 5
B
916 921parallel
Strand 6
B
1197 1201anti-parallel
Strand 7
B
1165 1169parallel
Strand 8
B
1023 1027parallel
Strand 9
B
1053 1059parallel
Strand 10
B
1086 1089parallel
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