Analysis of interatomic Contacts of Structural Units in PDB entry:
9C0I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C0I entry

There are 3 chains in PDB entry 9C0I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 425
P
 G 1 T 5
R
 G 0 C 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9C0I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
22 31Right-handed alpha
Helix 3
AA3
A
32 38Right-handed alpha
Helix 4
AA4
A
76 101Right-handed alpha
Helix 5
AA5
A
116 132Right-handed alpha
Helix 6
AA6
A
149 162Right-handed alpha
Helix 7
AA7
A
167 179Right-handed alpha
Helix 8
AA8
A
185 193Right-handed alpha
Helix 9
AA9
A
208 216Right-handed alpha
Helix 10
AB1
A
237 246Right-handed alpha
Helix 11
AB2
A
246 260Right-handed alpha
Helix 12
AB3
A
276 280Right-handed 310
Helix 13
AB4
A
282 291Right-handed alpha
Helix 14
AB5
A
300 303Right-handed 310
Helix 15
AB6
A
336 368Right-handed alpha
Helix 16
AB7
A
377 385Right-handed alpha
Helix 17
AB8
A
391 404Right-handed alpha
Helix 18
AB9
A
405 413Right-handed alpha
Helix 19
AC1
A
414 425Right-handed alpha
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There are 4 sheets in PDB entry 9C0I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 74first strand
Strand 2
A
44 54anti-parallel
Strand 3
A
181 184parallel
Strand 4
A
222 224anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 267first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
134 142anti-parallel
Strand 4
A
297 298anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 267first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
134 142anti-parallel
Strand 4
A
304 311anti-parallel
Strand 5
A
314 317anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 323first strand
Strand 2
A
326 328anti-parallel
Strand 3
A
333 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il