Analysis of interatomic Contacts of Structural Units in PDB entry:
9C0Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C0Q entry

There are 4 chains in PDB entry 9C0Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 40	ARG 798
B	GLY 40	ARG 798
C	THR 4	LEU 170
D	THR 4	LEU 170

There are 85 helices in PDB entry 9C0Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	63	Right-handed alpha
Helix 2	AA2	A	96	131	Right-handed alpha
Helix 3	AA3	A	146	154	Right-handed alpha
Helix 4	AA4	A	159	162	Right-handed 310
Helix 5	AA5	A	163	179	Right-handed alpha
Helix 6	AA6	A	180	182	Right-handed 310
Helix 7	AA7	A	188	218	Right-handed alpha
Helix 8	AA8	A	233	237	Right-handed 310
Helix 9	AA9	A	251	264	Right-handed alpha
Helix 10	AB1	A	276	284	Right-handed alpha
Helix 11	AB2	A	286	290	Right-handed 310
Helix 12	AB3	A	300	302	Right-handed 310
Helix 13	AB4	A	303	311	Right-handed alpha
Helix 14	AB5	A	326	334	Right-handed alpha
Helix 15	AB6	A	356	366	Right-handed alpha
Helix 16	AB7	A	376	392	Right-handed alpha
Helix 17	AB8	A	404	412	Right-handed alpha
Helix 18	AB9	A	418	424	Right-handed alpha
Helix 19	AC1	A	429	440	Right-handed alpha
Helix 20	AC2	A	442	452	Right-handed alpha
Helix 21	AC3	A	467	476	Right-handed alpha
Helix 22	AC4	A	476	482	Right-handed alpha
Helix 23	AC5	A	495	509	Right-handed alpha
Helix 24	AC6	A	527	539	Right-handed alpha
Helix 25	AC7	A	548	555	Right-handed alpha
Helix 26	AC8	A	564	569	Right-handed alpha
Helix 27	AC9	A	583	586	Right-handed 310
Helix 28	AD1	A	587	601	Right-handed alpha
Helix 29	AD2	A	609	620	Right-handed alpha
Helix 30	AD3	A	632	645	Right-handed alpha
Helix 31	AD4	A	653	659	Right-handed 310
Helix 32	AD5	A	698	709	Right-handed alpha
Helix 33	AD6	A	716	736	Right-handed alpha
Helix 34	AD7	A	741	746	Right-handed 310
Helix 35	AD8	A	756	768	Right-handed alpha
Helix 36	AD9	B	53	63	Right-handed alpha
Helix 37	AE1	B	96	131	Right-handed alpha
Helix 38	AE2	B	146	154	Right-handed alpha
Helix 39	AE3	B	159	162	Right-handed 310
Helix 40	AE4	B	163	179	Right-handed alpha
Helix 41	AE5	B	180	182	Right-handed 310
Helix 42	AE6	B	188	218	Right-handed alpha
Helix 43	AE7	B	233	237	Right-handed 310
Helix 44	AE8	B	251	264	Right-handed alpha
Helix 45	AE9	B	276	284	Right-handed alpha
Helix 46	AF1	B	286	290	Right-handed 310
Helix 47	AF2	B	300	302	Right-handed 310
Helix 48	AF3	B	303	311	Right-handed alpha
Helix 49	AF4	B	326	334	Right-handed alpha
Helix 50	AF5	B	356	366	Right-handed alpha
Helix 51	AF6	B	376	392	Right-handed alpha
Helix 52	AF7	B	405	412	Right-handed alpha
Helix 53	AF8	B	418	424	Right-handed alpha
Helix 54	AF9	B	429	440	Right-handed alpha
Helix 55	AG1	B	442	452	Right-handed alpha
Helix 56	AG2	B	467	476	Right-handed alpha
Helix 57	AG3	B	476	482	Right-handed alpha
Helix 58	AG4	B	495	509	Right-handed alpha
Helix 59	AG5	B	527	539	Right-handed alpha
Helix 60	AG6	B	548	555	Right-handed alpha
Helix 61	AG7	B	564	569	Right-handed alpha
Helix 62	AG8	B	583	586	Right-handed 310
Helix 63	AG9	B	587	601	Right-handed alpha
Helix 64	AH1	B	609	620	Right-handed alpha
Helix 65	AH2	B	632	645	Right-handed alpha
Helix 66	AH3	B	653	659	Right-handed 310
Helix 67	AH4	B	698	709	Right-handed alpha
Helix 68	AH5	B	716	736	Right-handed alpha
Helix 69	AH6	B	741	746	Right-handed 310
Helix 70	AH7	B	748	752	Right-handed 310
Helix 71	AH8	B	756	768	Right-handed alpha
Helix 72	AH9	C	23	34	Right-handed alpha
Helix 73	AI1	C	43	46	Right-handed 310
Helix 74	AI2	C	47	62	Right-handed alpha
Helix 75	AI3	C	71	76	Right-handed 310
Helix 76	AI4	C	86	95	Right-handed alpha
Helix 77	AI5	C	117	127	Right-handed alpha
Helix 78	AI6	C	155	169	Right-handed alpha
Helix 79	AI7	D	23	34	Right-handed alpha
Helix 80	AI8	D	43	46	Right-handed 310
Helix 81	AI9	D	47	62	Right-handed alpha
Helix 82	AJ1	D	71	76	Right-handed 310
Helix 83	AJ2	D	86	95	Right-handed alpha
Helix 84	AJ3	D	117	127	Right-handed alpha
Helix 85	AJ4	D	155	169	Right-handed alpha

There are 14 sheets in PDB entry 9C0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	67	first strand
Strand 2	A	661	664	anti-parallel
Strand 3	A	691	695	anti-parallel
Strand 4	A	649	651	parallel
Strand 5	A	623	629	parallel
Strand 6	A	514	521	parallel
Strand 7	A	543	546	parallel
Strand 8	A	578	580	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	83	84	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	232	first strand
Strand 2	A	485	488	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	271	275	parallel
Strand 3	A	243	247	parallel
Strand 4	A	315	318	parallel
Strand 5	A	338	340	parallel
Strand 6	A	371	373	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	684	first strand
Strand 2	A	673	676	anti-parallel
Strand 3	A	793	794	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	771	773	first strand
Strand 2	A	778	781	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	67	first strand
Strand 2	B	661	664	anti-parallel
Strand 3	B	691	695	anti-parallel
Strand 4	B	649	651	parallel
Strand 5	B	623	627	parallel
Strand 6	B	514	517	parallel
Strand 7	B	543	546	parallel
Strand 8	B	578	580	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	83	84	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	485	488	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	271	275	parallel
Strand 3	B	243	247	parallel
Strand 4	B	315	318	parallel
Strand 5	B	338	340	parallel
Strand 6	B	371	373	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	684	first strand
Strand 2	B	673	676	anti-parallel
Strand 3	B	793	794	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	771	773	first strand
Strand 2	B	778	781	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	149	150	parallel
Strand 3	C	135	138	parallel
Strand 4	C	110	114	parallel
Strand 5	C	37	41	parallel
Strand 6	C	65	67	parallel
Strand 7	C	82	83	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	149	150	parallel
Strand 3	D	135	138	parallel
Strand 4	D	110	114	parallel
Strand 5	D	37	41	parallel
Strand 6	D	65	67	parallel
Strand 7	D	82	83	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C0Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C0Q