Analysis of interatomic Contacts of Structural Units in PDB entry:
9C0R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C0R entry

There are 4 chains in PDB entry 9C0R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 40	LYS 801
B	GLY 40	LYS 801
C	ASP 3	LEU 170
D	ASP 3	LEU 170

There are 80 helices in PDB entry 9C0R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	63	Right-handed alpha
Helix 2	AA2	A	96	131	Right-handed alpha
Helix 3	AA3	A	146	154	Right-handed alpha
Helix 4	AA4	A	160	162	Right-handed 310
Helix 5	AA5	A	163	180	Right-handed alpha
Helix 6	AA6	A	188	218	Right-handed alpha
Helix 7	AA7	A	233	237	Right-handed 310
Helix 8	AA8	A	251	264	Right-handed alpha
Helix 9	AA9	A	276	284	Right-handed alpha
Helix 10	AB1	A	300	302	Right-handed 310
Helix 11	AB2	A	303	311	Right-handed alpha
Helix 12	AB3	A	326	333	Right-handed alpha
Helix 13	AB4	A	356	367	Right-handed alpha
Helix 14	AB5	A	376	392	Right-handed alpha
Helix 15	AB6	A	403	414	Right-handed alpha
Helix 16	AB7	A	418	424	Right-handed alpha
Helix 17	AB8	A	429	439	Right-handed alpha
Helix 18	AB9	A	442	452	Right-handed alpha
Helix 19	AC1	A	467	476	Right-handed alpha
Helix 20	AC2	A	476	482	Right-handed alpha
Helix 21	AC3	A	495	509	Right-handed alpha
Helix 22	AC4	A	528	539	Right-handed alpha
Helix 23	AC5	A	548	555	Right-handed alpha
Helix 24	AC6	A	564	569	Right-handed alpha
Helix 25	AC7	A	583	585	Right-handed 310
Helix 26	AC8	A	586	601	Right-handed alpha
Helix 27	AC9	A	609	621	Right-handed alpha
Helix 28	AD1	A	632	645	Right-handed alpha
Helix 29	AD2	A	653	658	Right-handed 310
Helix 30	AD3	A	698	709	Right-handed alpha
Helix 31	AD4	A	716	735	Right-handed alpha
Helix 32	AD5	A	741	746	Right-handed 310
Helix 33	AD6	A	756	768	Right-handed alpha
Helix 34	AD7	B	53	63	Right-handed alpha
Helix 35	AD8	B	96	131	Right-handed alpha
Helix 36	AD9	B	146	154	Right-handed alpha
Helix 37	AE1	B	160	162	Right-handed 310
Helix 38	AE2	B	163	180	Right-handed alpha
Helix 39	AE3	B	188	218	Right-handed alpha
Helix 40	AE4	B	233	237	Right-handed 310
Helix 41	AE5	B	251	264	Right-handed alpha
Helix 42	AE6	B	276	284	Right-handed alpha
Helix 43	AE7	B	300	302	Right-handed 310
Helix 44	AE8	B	303	311	Right-handed alpha
Helix 45	AE9	B	326	333	Right-handed alpha
Helix 46	AF1	B	356	367	Right-handed alpha
Helix 47	AF2	B	376	392	Right-handed alpha
Helix 48	AF3	B	403	414	Right-handed alpha
Helix 49	AF4	B	418	424	Right-handed alpha
Helix 50	AF5	B	429	439	Right-handed alpha
Helix 51	AF6	B	442	452	Right-handed alpha
Helix 52	AF7	B	467	476	Right-handed alpha
Helix 53	AF8	B	476	482	Right-handed alpha
Helix 54	AF9	B	495	509	Right-handed alpha
Helix 55	AG1	B	528	539	Right-handed alpha
Helix 56	AG2	B	548	555	Right-handed alpha
Helix 57	AG3	B	564	569	Right-handed alpha
Helix 58	AG4	B	583	585	Right-handed 310
Helix 59	AG5	B	586	601	Right-handed alpha
Helix 60	AG6	B	609	621	Right-handed alpha
Helix 61	AG7	B	632	645	Right-handed alpha
Helix 62	AG8	B	653	658	Right-handed 310
Helix 63	AG9	B	698	709	Right-handed alpha
Helix 64	AH1	B	716	735	Right-handed alpha
Helix 65	AH2	B	741	746	Right-handed 310
Helix 66	AH3	B	756	768	Right-handed alpha
Helix 67	AH4	C	23	33	Right-handed alpha
Helix 68	AH5	C	43	46	Right-handed 310
Helix 69	AH6	C	47	62	Right-handed alpha
Helix 70	AH7	C	71	75	Right-handed 310
Helix 71	AH8	C	86	95	Right-handed alpha
Helix 72	AH9	C	117	131	Right-handed alpha
Helix 73	AI1	C	155	169	Right-handed alpha
Helix 74	AI2	D	23	33	Right-handed alpha
Helix 75	AI3	D	43	46	Right-handed 310
Helix 76	AI4	D	47	62	Right-handed alpha
Helix 77	AI5	D	71	75	Right-handed 310
Helix 78	AI6	D	86	95	Right-handed alpha
Helix 79	AI7	D	117	131	Right-handed alpha
Helix 80	AI8	D	155	169	Right-handed alpha

There are 14 sheets in PDB entry 9C0R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	68	first strand
Strand 2	A	660	664	anti-parallel
Strand 3	A	691	695	anti-parallel
Strand 4	A	649	651	parallel
Strand 5	A	623	627	parallel
Strand 6	A	514	517	parallel
Strand 7	A	543	546	parallel
Strand 8	A	578	580	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	83	84	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	232	first strand
Strand 2	A	485	488	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	271	275	parallel
Strand 3	A	243	247	parallel
Strand 4	A	315	318	parallel
Strand 5	A	338	340	parallel
Strand 6	A	371	373	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	684	first strand
Strand 2	A	673	676	anti-parallel
Strand 3	A	793	794	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	771	773	first strand
Strand 2	A	778	781	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	660	664	anti-parallel
Strand 3	B	691	695	anti-parallel
Strand 4	B	649	651	parallel
Strand 5	B	623	627	parallel
Strand 6	B	514	517	parallel
Strand 7	B	543	546	parallel
Strand 8	B	578	580	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	83	84	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	485	488	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	271	275	parallel
Strand 3	B	243	247	parallel
Strand 4	B	315	318	parallel
Strand 5	B	338	340	parallel
Strand 6	B	371	373	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	684	first strand
Strand 2	B	673	676	anti-parallel
Strand 3	B	793	794	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	771	773	first strand
Strand 2	B	778	781	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	149	150	parallel
Strand 3	C	135	138	parallel
Strand 4	C	110	114	parallel
Strand 5	C	37	41	parallel
Strand 6	C	65	67	parallel
Strand 7	C	82	84	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	149	150	parallel
Strand 3	D	135	138	parallel
Strand 4	D	110	114	parallel
Strand 5	D	37	41	parallel
Strand 6	D	65	67	parallel
Strand 7	D	82	84	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C0R

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C0R