Analysis of interatomic Contacts of Structural Units in PDB entry:
9C0S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C0S entry

There are 5 chains in PDB entry 9C0S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 40	LYS 801
B	GLY 40	CYS 800
C	VAL 2	LEU 170
D	VAL 2	LEU 170
E	PRO 5	ALA 401

There are103 helices in PDB entry 9C0S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	63	Right-handed alpha
Helix 2	AA2	A	96	132	Right-handed alpha
Helix 3	AA3	A	146	153	Right-handed alpha
Helix 4	AA4	A	162	180	Right-handed alpha
Helix 5	AA5	A	188	218	Right-handed alpha
Helix 6	AA6	A	233	237	Right-handed 310
Helix 7	AA7	A	251	264	Right-handed alpha
Helix 8	AA8	A	276	284	Right-handed alpha
Helix 9	AA9	A	286	290	Right-handed 310
Helix 10	AB1	A	302	310	Right-handed alpha
Helix 11	AB2	A	326	333	Right-handed alpha
Helix 12	AB3	A	356	366	Right-handed alpha
Helix 13	AB4	A	376	392	Right-handed alpha
Helix 14	AB5	A	403	414	Right-handed alpha
Helix 15	AB6	A	418	424	Right-handed alpha
Helix 16	AB7	A	429	438	Right-handed alpha
Helix 17	AB8	A	442	452	Right-handed alpha
Helix 18	AB9	A	458	462	Right-handed 310
Helix 19	AC1	A	467	476	Right-handed alpha
Helix 20	AC2	A	476	483	Right-handed alpha
Helix 21	AC3	A	497	508	Right-handed alpha
Helix 22	AC4	A	527	540	Right-handed alpha
Helix 23	AC5	A	548	555	Right-handed alpha
Helix 24	AC6	A	564	569	Right-handed alpha
Helix 25	AC7	A	583	585	Right-handed 310
Helix 26	AC8	A	586	601	Right-handed alpha
Helix 27	AC9	A	609	621	Right-handed alpha
Helix 28	AD1	A	632	645	Right-handed alpha
Helix 29	AD2	A	653	658	Right-handed 310
Helix 30	AD3	A	668	671	Right-handed 310
Helix 31	AD4	A	698	709	Right-handed alpha
Helix 32	AD5	A	716	736	Right-handed alpha
Helix 33	AD6	A	741	746	Right-handed 310
Helix 34	AD7	A	748	752	Right-handed 310
Helix 35	AD8	A	756	768	Right-handed alpha
Helix 36	AD9	A	796	800	Right-handed 310
Helix 37	AE1	B	53	63	Right-handed alpha
Helix 38	AE2	B	96	132	Right-handed alpha
Helix 39	AE3	B	146	154	Right-handed alpha
Helix 40	AE4	B	159	161	Right-handed 310
Helix 41	AE5	B	162	179	Right-handed alpha
Helix 42	AE6	B	180	182	Right-handed 310
Helix 43	AE7	B	188	219	Right-handed alpha
Helix 44	AE8	B	253	263	Right-handed alpha
Helix 45	AE9	B	276	285	Right-handed alpha
Helix 46	AF1	B	300	302	Right-handed 310
Helix 47	AF2	B	303	311	Right-handed alpha
Helix 48	AF3	B	326	334	Right-handed alpha
Helix 49	AF4	B	356	366	Right-handed alpha
Helix 50	AF5	B	376	392	Right-handed alpha
Helix 51	AF6	B	393	395	Right-handed 310
Helix 52	AF7	B	403	414	Right-handed alpha
Helix 53	AF8	B	418	424	Right-handed alpha
Helix 54	AF9	B	429	439	Right-handed alpha
Helix 55	AG1	B	442	452	Right-handed alpha
Helix 56	AG2	B	457	461	Right-handed 310
Helix 57	AG3	B	467	476	Right-handed alpha
Helix 58	AG4	B	476	481	Right-handed alpha
Helix 59	AG5	B	495	509	Right-handed alpha
Helix 60	AG6	B	527	539	Right-handed alpha
Helix 61	AG7	B	547	555	Right-handed alpha
Helix 62	AG8	B	564	569	Right-handed alpha
Helix 63	AG9	B	583	585	Right-handed 310
Helix 64	AH1	B	586	601	Right-handed alpha
Helix 65	AH2	B	609	621	Right-handed alpha
Helix 66	AH3	B	632	645	Right-handed alpha
Helix 67	AH4	B	653	658	Right-handed 310
Helix 68	AH5	B	668	671	Right-handed 310
Helix 69	AH6	B	698	709	Right-handed alpha
Helix 70	AH7	B	716	735	Right-handed alpha
Helix 71	AH8	B	741	746	Right-handed 310
Helix 72	AH9	B	753	755	Right-handed 310
Helix 73	AI1	B	756	769	Right-handed alpha
Helix 74	AI2	C	23	33	Right-handed alpha
Helix 75	AI3	C	43	46	Right-handed 310
Helix 76	AI4	C	47	61	Right-handed alpha
Helix 77	AI5	C	71	77	Right-handed alpha
Helix 78	AI6	C	86	95	Right-handed alpha
Helix 79	AI7	C	117	131	Right-handed alpha
Helix 80	AI8	C	155	169	Right-handed alpha
Helix 81	AI9	D	23	34	Right-handed alpha
Helix 82	AJ1	D	47	62	Right-handed alpha
Helix 83	AJ2	D	71	76	Right-handed 310
Helix 84	AJ3	D	86	94	Right-handed alpha
Helix 85	AJ4	D	117	132	Right-handed alpha
Helix 86	AJ5	D	155	170	Right-handed alpha
Helix 87	AJ6	E	18	20	Right-handed 310
Helix 88	AJ7	E	56	60	Right-handed 310
Helix 89	AJ8	E	80	82	Right-handed 310
Helix 90	AJ9	E	83	96	Right-handed alpha
Helix 91	AK1	E	116	123	Right-handed alpha
Helix 92	AK2	E	125	140	Right-handed alpha
Helix 93	AK3	E	153	178	Right-handed alpha
Helix 94	AK4	E	191	195	Right-handed 310
Helix 95	AK5	E	215	226	Right-handed alpha
Helix 96	AK6	E	248	258	Right-handed alpha
Helix 97	AK7	E	310	316	Right-handed alpha
Helix 98	AK8	E	332	337	Right-handed 310
Helix 99	AK9	E	341	348	Right-handed 310
Helix 100	AL1	E	354	362	Right-handed alpha
Helix 101	AL2	E	369	373	Right-handed 310
Helix 102	AL3	E	381	392	Right-handed alpha
Helix 103	AL4	E	394	398	Right-handed 310

There are 19 sheets in PDB entry 9C0S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	68	first strand
Strand 2	A	660	664	anti-parallel
Strand 3	A	691	695	anti-parallel
Strand 4	A	649	651	parallel
Strand 5	A	623	629	parallel
Strand 6	A	514	521	parallel
Strand 7	A	543	546	parallel
Strand 8	A	578	580	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	83	84	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	232	first strand
Strand 2	A	485	488	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	271	275	parallel
Strand 3	A	243	247	parallel
Strand 4	A	315	318	parallel
Strand 5	A	338	340	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	684	first strand
Strand 2	A	673	676	anti-parallel
Strand 3	A	793	794	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	771	773	first strand
Strand 2	A	778	781	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	660	664	anti-parallel
Strand 3	B	691	695	anti-parallel
Strand 4	B	649	651	parallel
Strand 5	B	623	627	parallel
Strand 6	B	514	517	parallel
Strand 7	B	543	546	parallel
Strand 8	B	578	580	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	83	84	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	485	488	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	271	275	parallel
Strand 3	B	243	247	parallel
Strand 4	B	315	318	parallel
Strand 5	B	338	340	parallel
Strand 6	B	371	373	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	684	first strand
Strand 2	B	673	676	anti-parallel
Strand 3	B	793	794	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	771	773	first strand
Strand 2	B	778	781	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	149	150	parallel
Strand 3	C	135	138	parallel
Strand 4	C	110	114	parallel
Strand 5	C	37	41	parallel
Strand 6	C	65	67	parallel
Strand 7	C	82	83	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	149	150	parallel
Strand 3	D	135	138	parallel
Strand 4	D	110	114	parallel
Strand 5	D	38	41	parallel
Strand 6	D	65	67	parallel
Strand 7	D	82	84	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	66	first strand
Strand 2	E	22	27	parallel
Strand 3	E	111	115	anti-parallel
Strand 4	E	101	102	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	39	first strand
Strand 2	E	69	75	parallel
Strand 3	E	145	151	anti-parallel
Strand 4	E	49	53	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	203	first strand
Strand 2	E	185	189	anti-parallel
Strand 3	E	231	235	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	241	first strand
Strand 2	E	246	247	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	328	330	first strand
Strand 2	E	283	288	anti-parallel
Strand 3	E	293	298	anti-parallel
Strand 4	E	350	352	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C0S

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C0S