Analysis of interatomic Contacts of Structural Units in PDB entry:
9C0W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C0W entry

There are 2 chains in PDB entry 9C0W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -4PHE 211
B
 GLY -7PHE 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9C0W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 34Right-handed alpha
Helix 2
AA2
A
45 47Right-handed 310
Helix 3
AA3
A
53 65Right-handed alpha
Helix 4
AA4
A
68 72Right-handed 310
Helix 5
AA5
A
73 93Right-handed alpha
Helix 6
AA6
A
108 119Right-handed alpha
Helix 7
AA7
A
154 159Right-handed 310
Helix 8
AA8
A
160 173Right-handed alpha
Helix 9
AA9
A
189 191Right-handed 310
Helix 10
AB1
A
192 211Right-handed alpha
Helix 11
AB2
B
13 16Right-handed 310
Helix 12
AB3
B
17 34Right-handed alpha
Helix 13
AB4
B
45 47Right-handed 310
Helix 14
AB5
B
53 65Right-handed alpha
Helix 15
AB6
B
73 92Right-handed alpha
Helix 16
AB7
B
108 117Right-handed alpha
Helix 17
AB8
B
153 158Right-handed 310
Helix 18
AB9
B
160 173Right-handed alpha
Helix 19
AC1
B
189 191Right-handed 310
Helix 20
AC2
B
192 208Right-handed alpha
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There are 4 sheets in PDB entry 9C0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 43first strand
Strand 2
A
3 8parallel
Strand 3
A
95 101parallel
Strand 4
A
140 147parallel
Strand 5
A
178 184parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
131 134anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 43first strand
Strand 2
B
3 8parallel
Strand 3
B
95 101parallel
Strand 4
B
140 147parallel
Strand 5
B
178 184parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 128first strand
Strand 2
B
131 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il