Analysis of interatomic Contacts of Structural Units in PDB entry:
9C13

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C13 entry

There are 5 chains in PDB entry 9C13 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ASP 427
D	MET 1	ASP 427
A	MET 1	SER 439
C	MET 1	SER 439
E	GLY 1191	GLY 1457

There are 96 helices in PDB entry 9C13. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	10	28	Right-handed alpha
Helix 2	AA2	B	41	46	Right-handed alpha
Helix 3	AA3	B	47	49	Right-handed 310
Helix 4	AA4	B	69	79	Right-handed alpha
Helix 5	AA5	B	86	88	Right-handed 310
Helix 6	AA6	B	100	106	Right-handed alpha
Helix 7	AA7	B	108	127	Right-handed alpha
Helix 8	AA8	B	142	159	Right-handed alpha
Helix 9	AA9	B	180	196	Right-handed alpha
Helix 10	AB1	B	204	214	Right-handed alpha
Helix 11	AB2	B	221	237	Right-handed alpha
Helix 12	AB3	B	237	242	Right-handed alpha
Helix 13	AB4	B	249	258	Right-handed alpha
Helix 14	AB5	B	285	294	Right-handed alpha
Helix 15	AB6	B	295	299	Right-handed 310
Helix 16	AB7	B	304	308	Right-handed 310
Helix 17	AB8	B	322	337	Right-handed alpha
Helix 18	AB9	B	338	341	Right-handed 310
Helix 19	AC1	B	374	391	Right-handed alpha
Helix 20	AC2	B	394	400	Right-handed alpha
Helix 21	AC3	B	404	427	Right-handed alpha
Helix 22	AC4	D	10	28	Right-handed alpha
Helix 23	AC5	D	41	46	Right-handed alpha
Helix 24	AC6	D	47	49	Right-handed 310
Helix 25	AC7	D	69	79	Right-handed alpha
Helix 26	AC8	D	86	88	Right-handed 310
Helix 27	AC9	D	100	106	Right-handed alpha
Helix 28	AD1	D	108	125	Right-handed alpha
Helix 29	AD2	D	142	159	Right-handed alpha
Helix 30	AD3	D	180	196	Right-handed alpha
Helix 31	AD4	D	204	214	Right-handed alpha
Helix 32	AD5	D	221	237	Right-handed alpha
Helix 33	AD6	D	237	242	Right-handed alpha
Helix 34	AD7	D	249	258	Right-handed alpha
Helix 35	AD8	D	285	294	Right-handed alpha
Helix 36	AD9	D	295	299	Right-handed 310
Helix 37	AE1	D	304	308	Right-handed 310
Helix 38	AE2	D	322	337	Right-handed alpha
Helix 39	AE3	D	338	341	Right-handed 310
Helix 40	AE4	D	373	391	Right-handed alpha
Helix 41	AE5	D	394	400	Right-handed alpha
Helix 42	AE6	D	405	427	Right-handed alpha
Helix 43	AE7	A	10	28	Right-handed alpha
Helix 44	AE8	A	48	51	Right-handed 310
Helix 45	AE9	A	72	81	Right-handed alpha
Helix 46	AF1	A	88	90	Right-handed 310
Helix 47	AF2	A	102	108	Right-handed alpha
Helix 48	AF3	A	110	113	Right-handed 310
Helix 49	AF4	A	114	128	Right-handed alpha
Helix 50	AF5	A	143	162	Right-handed alpha
Helix 51	AF6	A	182	195	Right-handed alpha
Helix 52	AF7	A	206	217	Right-handed alpha
Helix 53	AF8	A	223	244	Right-handed alpha
Helix 54	AF9	A	251	260	Right-handed alpha
Helix 55	AG1	A	287	297	Right-handed alpha
Helix 56	AG2	A	298	301	Right-handed 310
Helix 57	AG3	A	306	310	Right-handed 310
Helix 58	AG4	A	324	337	Right-handed alpha
Helix 59	AG5	A	384	401	Right-handed alpha
Helix 60	AG6	A	404	410	Right-handed alpha
Helix 61	AG7	A	414	437	Right-handed alpha
Helix 62	AG8	C	10	28	Right-handed alpha
Helix 63	AG9	C	47	51	Right-handed 310
Helix 64	AH1	C	72	80	Right-handed alpha
Helix 65	AH2	C	102	108	Right-handed alpha
Helix 66	AH3	C	111	129	Right-handed alpha
Helix 67	AH4	C	143	161	Right-handed alpha
Helix 68	AH5	C	182	195	Right-handed alpha
Helix 69	AH6	C	206	217	Right-handed alpha
Helix 70	AH7	C	223	244	Right-handed alpha
Helix 71	AH8	C	251	260	Right-handed alpha
Helix 72	AH9	C	277	282	Right-handed alpha
Helix 73	AI1	C	287	296	Right-handed alpha
Helix 74	AI2	C	297	301	Right-handed 310
Helix 75	AI3	C	306	310	Right-handed 310
Helix 76	AI4	C	324	338	Right-handed alpha
Helix 77	AI5	C	384	401	Right-handed alpha
Helix 78	AI6	C	404	410	Right-handed alpha
Helix 79	AI7	C	414	437	Right-handed alpha
Helix 80	AI8	E	1200	1210	Right-handed alpha
Helix 81	AI9	E	1222	1234	Right-handed alpha
Helix 82	AJ1	E	1238	1246	Right-handed alpha
Helix 83	AJ2	E	1249	1263	Right-handed alpha
Helix 84	AJ3	E	1267	1274	Right-handed alpha
Helix 85	AJ4	E	1274	1285	Right-handed alpha
Helix 86	AJ5	E	1290	1311	Right-handed alpha
Helix 87	AJ6	E	1316	1328	Right-handed alpha
Helix 88	AJ7	E	1336	1349	Right-handed alpha
Helix 89	AJ8	E	1354	1365	Right-handed alpha
Helix 90	AJ9	E	1366	1368	Right-handed 310
Helix 91	AK1	E	1370	1389	Right-handed alpha
Helix 92	AK2	E	1396	1404	Right-handed alpha
Helix 93	AK3	E	1405	1410	Right-handed 310
Helix 94	AK4	E	1413	1431	Right-handed alpha
Helix 95	AK5	E	1433	1438	Right-handed alpha
Helix 96	AK6	E	1444	1457	Right-handed alpha

There are 10 sheets in PDB entry 9C13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	3	9	parallel
Strand 4	B	130	138	parallel
Strand 5	B	163	170	parallel
Strand 6	B	198	203	parallel
Strand 7	B	265	271	parallel
Strand 8	B	364	371	anti-parallel
Strand 9	B	310	318	anti-parallel
Strand 10	B	349	354	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	58	61	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	63	67	parallel
Strand 3	D	3	9	parallel
Strand 4	D	130	138	parallel
Strand 5	D	163	170	parallel
Strand 6	D	198	203	parallel
Strand 7	D	265	271	parallel
Strand 8	D	363	371	anti-parallel
Strand 9	D	310	319	anti-parallel
Strand 10	D	349	354	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	54	first strand
Strand 2	D	58	61	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	4	9	parallel
Strand 4	A	134	140	parallel
Strand 5	A	165	172	parallel
Strand 6	A	200	205	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	351	356	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	65	69	parallel
Strand 3	C	3	9	parallel
Strand 4	C	132	140	parallel
Strand 5	C	165	172	parallel
Strand 6	C	200	205	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	61	63	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	273	first strand
Strand 2	C	373	381	anti-parallel
Strand 3	C	312	321	anti-parallel
Strand 4	C	351	356	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C13

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C13