Analysis of interatomic Contacts of Structural Units in PDB entry:
9C24


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C24 entry

There are 6 chains in PDB entry 9C24 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 1VAL 217
L
 ASP -1ASN 208
A
 GLN 1ASP 218
B
 ILE 0ASN 208
C
 PRO 40THR 200
D
 ASN 41PRO 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9C24. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
87 91Right-handed 310
Helix 2
AA2
L
77 81Right-handed 310
Helix 3
AA3
L
119 124Right-handed alpha
Helix 4
AA4
L
181 187Right-handed alpha
Helix 5
AA5
A
62 66Right-handed 310
Helix 6
AA6
A
87 91Right-handed 310
Helix 7
AA7
A
166 168Right-handed 310
Helix 8
AA8
A
195 199Right-handed 310
Helix 9
AA9
B
77 81Right-handed 310
Helix 10
AB1
B
119 124Right-handed alpha
Helix 11
AB2
B
181 185Right-handed alpha
Helix 12
AB3
C
41 46Right-handed alpha
Helix 13
AB4
C
48 75Right-handed alpha
Helix 14
AB5
C
93 113Right-handed alpha
Helix 15
AB6
C
120 140Right-handed alpha
Helix 16
AB7
C
141 146Right-handed alpha
Helix 17
AB8
C
151 156Right-handed alpha
Helix 18
AB9
C
170 199Right-handed alpha
Helix 19
AC1
D
42 74Right-handed alpha
Helix 20
AC2
D
93 113Right-handed alpha
Helix 21
AC3
D
120 140Right-handed alpha
Helix 22
AC4
D
141 146Right-handed alpha
Helix 23
AC5
D
151 160Right-handed alpha
Helix 24
AC6
D
170 201Right-handed alpha
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There are 22 sheets in PDB entry 9C24. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
117 121parallel
Strand 3
H
92 100anti-parallel
Strand 4
H
34 40anti-parallel
Strand 5
H
47 53anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
117 121parallel
Strand 3
H
92 100anti-parallel
Strand 4
H
109 113anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
130 134first strand
Strand 2
H
146 155anti-parallel
Strand 3
H
186 194anti-parallel
Strand 4
H
173 175anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
130 134first strand
Strand 2
H
146 155anti-parallel
Strand 3
H
186 194anti-parallel
Strand 4
H
179 180anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
161 164first strand
Strand 2
H
206 209anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
2 4first strand
Strand 2
L
17 23anti-parallel
Strand 3
L
68 73anti-parallel
Strand 4
L
60 64anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
8 12first strand
Strand 2
L
100 105parallel
Strand 3
L
82 88anti-parallel
Strand 4
L
31 36anti-parallel
Strand 5
L
43 47anti-parallel
Strand 6
L
51 52anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
112 116first strand
Strand 2
L
127 135anti-parallel
Strand 3
L
172 180anti-parallel
Strand 4
L
159 161anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
145 147first strand
Strand 2
L
190 193anti-parallel
Strand 3
L
205 207anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
117 121parallel
Strand 3
A
92 100anti-parallel
Strand 4
A
34 40anti-parallel
Strand 5
A
47 52anti-parallel
Strand 6
A
58 60anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
117 121parallel
Strand 3
A
92 100anti-parallel
Strand 4
A
109 113anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
146 155anti-parallel
Strand 3
A
186 194anti-parallel
Strand 4
A
173 175anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
146 155anti-parallel
Strand 3
A
186 194anti-parallel
Strand 4
A
179 180anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 164first strand
Strand 2
A
206 210anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
68 73anti-parallel
Strand 4
B
60 65anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
100 103parallel
Strand 3
B
83 88anti-parallel
Strand 4
B
31 36anti-parallel
Strand 5
B
43 47anti-parallel
Strand 6
B
51 52anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 116first strand
Strand 2
B
127 137anti-parallel
Strand 3
B
171 180anti-parallel
Strand 4
B
157 161anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
B
143 148anti-parallel
Strand 3
B
190 195anti-parallel
Strand 4
B
203 207anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 80first strand
Strand 2
C
86 88anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 80first strand
Strand 2
D
86 88anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il