Analysis of interatomic Contacts of Structural Units in PDB entry:
9C28

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C28 entry

There are 10 chains in PDB entry 9C28 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	TYR 371
B	ALA 2	TYR 371
C	ALA 2	TYR 371
D	ALA 2	TYR 371
E	ALA 2	TYR 371
F	ALA 2	TYR 371
G	ALA 2	TYR 371
H	ALA 2	TYR 371
I	ALA 2	TYR 371
J	ALA 2	TYR 371

There are140 helices in PDB entry 9C28. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed 310
Helix 2	AA2	A	10	19	Right-handed alpha
Helix 3	AA3	A	53	57	Right-handed 310
Helix 4	AA4	A	65	68	Right-handed 310
Helix 5	AA5	A	113	125	Right-handed alpha
Helix 6	AA6	A	126	128	Right-handed 310
Helix 7	AA7	A	172	187	Right-handed alpha
Helix 8	AA8	A	211	233	Right-handed alpha
Helix 9	AA9	A	258	263	Right-handed alpha
Helix 10	AB1	A	266	280	Right-handed alpha
Helix 11	AB2	A	280	287	Right-handed alpha
Helix 12	AB3	A	295	299	Right-handed 310
Helix 13	AB4	A	326	333	Right-handed alpha
Helix 14	AB5	A	347	360	Right-handed alpha
Helix 15	AB6	B	4	9	Right-handed 310
Helix 16	AB7	B	10	19	Right-handed alpha
Helix 17	AB8	B	53	57	Right-handed 310
Helix 18	AB9	B	65	68	Right-handed 310
Helix 19	AC1	B	113	125	Right-handed alpha
Helix 20	AC2	B	126	128	Right-handed 310
Helix 21	AC3	B	172	187	Right-handed alpha
Helix 22	AC4	B	211	233	Right-handed alpha
Helix 23	AC5	B	258	263	Right-handed alpha
Helix 24	AC6	B	266	280	Right-handed alpha
Helix 25	AC7	B	280	287	Right-handed alpha
Helix 26	AC8	B	295	299	Right-handed 310
Helix 27	AC9	B	326	333	Right-handed alpha
Helix 28	AD1	B	347	360	Right-handed alpha
Helix 29	AD2	C	4	9	Right-handed 310
Helix 30	AD3	C	10	19	Right-handed alpha
Helix 31	AD4	C	53	57	Right-handed 310
Helix 32	AD5	C	65	68	Right-handed 310
Helix 33	AD6	C	113	125	Right-handed alpha
Helix 34	AD7	C	126	128	Right-handed 310
Helix 35	AD8	C	172	187	Right-handed alpha
Helix 36	AD9	C	211	233	Right-handed alpha
Helix 37	AE1	C	258	263	Right-handed alpha
Helix 38	AE2	C	266	280	Right-handed alpha
Helix 39	AE3	C	280	287	Right-handed alpha
Helix 40	AE4	C	295	299	Right-handed 310
Helix 41	AE5	C	326	333	Right-handed alpha
Helix 42	AE6	C	347	360	Right-handed alpha
Helix 43	AE7	D	4	9	Right-handed 310
Helix 44	AE8	D	10	19	Right-handed alpha
Helix 45	AE9	D	53	57	Right-handed 310
Helix 46	AF1	D	65	68	Right-handed 310
Helix 47	AF2	D	113	125	Right-handed alpha
Helix 48	AF3	D	126	128	Right-handed 310
Helix 49	AF4	D	172	187	Right-handed alpha
Helix 50	AF5	D	211	233	Right-handed alpha
Helix 51	AF6	D	258	263	Right-handed alpha
Helix 52	AF7	D	266	280	Right-handed alpha
Helix 53	AF8	D	280	287	Right-handed alpha
Helix 54	AF9	D	295	299	Right-handed 310
Helix 55	AG1	D	326	333	Right-handed alpha
Helix 56	AG2	D	347	360	Right-handed alpha
Helix 57	AG3	E	4	9	Right-handed 310
Helix 58	AG4	E	10	19	Right-handed alpha
Helix 59	AG5	E	53	57	Right-handed 310
Helix 60	AG6	E	65	68	Right-handed 310
Helix 61	AG7	E	113	125	Right-handed alpha
Helix 62	AG8	E	126	128	Right-handed 310
Helix 63	AG9	E	172	187	Right-handed alpha
Helix 64	AH1	E	211	233	Right-handed alpha
Helix 65	AH2	E	258	263	Right-handed alpha
Helix 66	AH3	E	266	280	Right-handed alpha
Helix 67	AH4	E	280	287	Right-handed alpha
Helix 68	AH5	E	295	299	Right-handed 310
Helix 69	AH6	E	326	333	Right-handed alpha
Helix 70	AH7	E	347	360	Right-handed alpha
Helix 71	AH8	F	4	9	Right-handed 310
Helix 72	AH9	F	10	19	Right-handed alpha
Helix 73	AI1	F	53	57	Right-handed 310
Helix 74	AI2	F	65	68	Right-handed 310
Helix 75	AI3	F	113	125	Right-handed alpha
Helix 76	AI4	F	126	128	Right-handed 310
Helix 77	AI5	F	172	187	Right-handed alpha
Helix 78	AI6	F	211	233	Right-handed alpha
Helix 79	AI7	F	258	263	Right-handed alpha
Helix 80	AI8	F	266	280	Right-handed alpha
Helix 81	AI9	F	280	287	Right-handed alpha
Helix 82	AJ1	F	295	299	Right-handed 310
Helix 83	AJ2	F	326	333	Right-handed alpha
Helix 84	AJ3	F	347	360	Right-handed alpha
Helix 85	AJ4	G	4	9	Right-handed 310
Helix 86	AJ5	G	10	19	Right-handed alpha
Helix 87	AJ6	G	53	57	Right-handed 310
Helix 88	AJ7	G	65	68	Right-handed 310
Helix 89	AJ8	G	113	125	Right-handed alpha
Helix 90	AJ9	G	126	128	Right-handed 310
Helix 91	AK1	G	172	187	Right-handed alpha
Helix 92	AK2	G	211	233	Right-handed alpha
Helix 93	AK3	G	258	263	Right-handed alpha
Helix 94	AK4	G	266	280	Right-handed alpha
Helix 95	AK5	G	280	287	Right-handed alpha
Helix 96	AK6	G	295	299	Right-handed 310
Helix 97	AK7	G	326	333	Right-handed alpha
Helix 98	AK8	G	347	360	Right-handed alpha
Helix 99	AK9	H	4	9	Right-handed 310
Helix 100	AL1	H	10	19	Right-handed alpha
Helix 101	AL2	H	53	57	Right-handed 310
Helix 102	AL3	H	65	68	Right-handed 310
Helix 103	AL4	H	113	125	Right-handed alpha
Helix 104	AL5	H	126	128	Right-handed 310
Helix 105	AL6	H	172	187	Right-handed alpha
Helix 106	AL7	H	211	233	Right-handed alpha
Helix 107	AL8	H	258	263	Right-handed alpha
Helix 108	AL9	H	266	280	Right-handed alpha
Helix 109	AM1	H	280	287	Right-handed alpha
Helix 110	AM2	H	295	299	Right-handed 310
Helix 111	AM3	H	326	333	Right-handed alpha
Helix 112	AM4	H	347	360	Right-handed alpha
Helix 113	AM5	I	4	9	Right-handed 310
Helix 114	AM6	I	10	19	Right-handed alpha
Helix 115	AM7	I	53	57	Right-handed 310
Helix 116	AM8	I	65	68	Right-handed 310
Helix 117	AM9	I	113	125	Right-handed alpha
Helix 118	AN1	I	126	128	Right-handed 310
Helix 119	AN2	I	172	187	Right-handed alpha
Helix 120	AN3	I	211	233	Right-handed alpha
Helix 121	AN4	I	258	263	Right-handed alpha
Helix 122	AN5	I	266	280	Right-handed alpha
Helix 123	AN6	I	280	287	Right-handed alpha
Helix 124	AN7	I	295	299	Right-handed 310
Helix 125	AN8	I	326	333	Right-handed alpha
Helix 126	AN9	I	347	360	Right-handed alpha
Helix 127	AO1	J	4	9	Right-handed 310
Helix 128	AO2	J	10	19	Right-handed alpha
Helix 129	AO3	J	53	57	Right-handed 310
Helix 130	AO4	J	65	68	Right-handed 310
Helix 131	AO5	J	113	125	Right-handed alpha
Helix 132	AO6	J	126	128	Right-handed 310
Helix 133	AO7	J	172	187	Right-handed alpha
Helix 134	AO8	J	211	233	Right-handed alpha
Helix 135	AO9	J	258	263	Right-handed alpha
Helix 136	AP1	J	266	280	Right-handed alpha
Helix 137	AP2	J	280	287	Right-handed alpha
Helix 138	AP3	J	295	299	Right-handed 310
Helix 139	AP4	J	326	333	Right-handed alpha
Helix 140	AP5	J	347	360	Right-handed alpha

There are 20 sheets in PDB entry 9C28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	76	86	anti-parallel
Strand 3	A	95	102	anti-parallel
Strand 4	A	26	33	parallel
Strand 5	A	40	47	anti-parallel
Strand 6	E	190	195	anti-parallel
Strand 7	E	201	206	anti-parallel
Strand 8	E	130	140	anti-parallel
Strand 9	E	235	237	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	210	first strand
Strand 2	E	130	140	anti-parallel
Strand 3	E	252	257	anti-parallel
Strand 4	E	337	339	anti-parallel
Strand 5	E	323	325	anti-parallel
Strand 6	E	314	316	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	210	first strand
Strand 2	A	130	140	anti-parallel
Strand 3	A	252	257	anti-parallel
Strand 4	A	337	339	anti-parallel
Strand 5	A	323	325	anti-parallel
Strand 6	A	314	316	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	130	140	anti-parallel
Strand 3	A	201	206	anti-parallel
Strand 4	A	190	195	anti-parallel
Strand 5	B	40	47	anti-parallel
Strand 6	B	26	33	anti-parallel
Strand 7	B	95	102	parallel
Strand 8	B	76	86	anti-parallel
Strand 9	B	60	63	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	130	140	anti-parallel
Strand 3	B	252	257	anti-parallel
Strand 4	B	337	339	anti-parallel
Strand 5	B	323	325	anti-parallel
Strand 6	B	314	316	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	130	140	anti-parallel
Strand 3	B	201	206	anti-parallel
Strand 4	B	190	195	anti-parallel
Strand 5	C	40	47	anti-parallel
Strand 6	C	26	33	anti-parallel
Strand 7	C	95	102	parallel
Strand 8	C	76	86	anti-parallel
Strand 9	C	60	63	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	210	first strand
Strand 2	C	130	140	anti-parallel
Strand 3	C	252	257	anti-parallel
Strand 4	C	337	339	anti-parallel
Strand 5	C	323	325	anti-parallel
Strand 6	C	314	316	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	237	first strand
Strand 2	C	130	140	anti-parallel
Strand 3	C	201	206	anti-parallel
Strand 4	C	190	195	anti-parallel
Strand 5	D	40	47	anti-parallel
Strand 6	D	26	33	anti-parallel
Strand 7	D	95	102	parallel
Strand 8	D	76	86	anti-parallel
Strand 9	D	60	63	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	210	first strand
Strand 2	D	130	140	anti-parallel
Strand 3	D	252	257	anti-parallel
Strand 4	D	337	339	anti-parallel
Strand 5	D	323	325	anti-parallel
Strand 6	D	314	316	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	237	first strand
Strand 2	D	130	140	anti-parallel
Strand 3	D	201	206	anti-parallel
Strand 4	D	190	195	anti-parallel
Strand 5	E	40	47	anti-parallel
Strand 6	E	26	33	anti-parallel
Strand 7	E	95	102	parallel
Strand 8	E	76	86	anti-parallel
Strand 9	E	60	63	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	63	first strand
Strand 2	F	76	86	anti-parallel
Strand 3	F	95	102	anti-parallel
Strand 4	F	26	33	parallel
Strand 5	F	40	47	anti-parallel
Strand 6	J	190	195	anti-parallel
Strand 7	J	201	206	anti-parallel
Strand 8	J	130	140	anti-parallel
Strand 9	J	235	237	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	209	210	first strand
Strand 2	J	130	140	anti-parallel
Strand 3	J	252	257	anti-parallel
Strand 4	J	337	339	anti-parallel
Strand 5	J	323	325	anti-parallel
Strand 6	J	314	316	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	209	210	first strand
Strand 2	F	130	140	anti-parallel
Strand 3	F	252	257	anti-parallel
Strand 4	F	337	339	anti-parallel
Strand 5	F	323	325	anti-parallel
Strand 6	F	314	316	parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	237	first strand
Strand 2	F	130	140	anti-parallel
Strand 3	F	201	206	anti-parallel
Strand 4	F	190	195	anti-parallel
Strand 5	G	40	47	anti-parallel
Strand 6	G	26	33	anti-parallel
Strand 7	G	95	102	parallel
Strand 8	G	76	86	anti-parallel
Strand 9	G	60	63	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	209	210	first strand
Strand 2	G	130	140	anti-parallel
Strand 3	G	252	257	anti-parallel
Strand 4	G	337	339	anti-parallel
Strand 5	G	323	325	anti-parallel
Strand 6	G	314	316	parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	235	237	first strand
Strand 2	G	130	140	anti-parallel
Strand 3	G	201	206	anti-parallel
Strand 4	G	190	195	anti-parallel
Strand 5	H	40	47	anti-parallel
Strand 6	H	26	33	anti-parallel
Strand 7	H	95	102	parallel
Strand 8	H	76	86	anti-parallel
Strand 9	H	60	63	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	209	210	first strand
Strand 2	H	130	140	anti-parallel
Strand 3	H	252	257	anti-parallel
Strand 4	H	337	339	anti-parallel
Strand 5	H	323	325	anti-parallel
Strand 6	H	314	316	parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	235	237	first strand
Strand 2	H	130	140	anti-parallel
Strand 3	H	201	206	anti-parallel
Strand 4	H	190	195	anti-parallel
Strand 5	I	40	47	anti-parallel
Strand 6	I	26	33	anti-parallel
Strand 7	I	95	102	parallel
Strand 8	I	76	86	anti-parallel
Strand 9	I	60	63	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	209	210	first strand
Strand 2	I	130	140	anti-parallel
Strand 3	I	252	257	anti-parallel
Strand 4	I	337	339	anti-parallel
Strand 5	I	323	325	anti-parallel
Strand 6	I	314	316	parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	235	237	first strand
Strand 2	I	130	140	anti-parallel
Strand 3	I	201	206	anti-parallel
Strand 4	I	190	195	anti-parallel
Strand 5	J	40	47	anti-parallel
Strand 6	J	26	33	anti-parallel
Strand 7	J	95	102	parallel
Strand 8	J	76	86	anti-parallel
Strand 9	J	60	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C28

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C28