Analysis of interatomic Contacts of Structural Units in PDB entry:
9C38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C38 entry

There is 1 chain in PDB entry 9C38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 124GLU 596
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9C38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 169Right-handed alpha
Helix 2
AA2
A
170 173Right-handed 310
Helix 3
AA3
A
187 198Right-handed alpha
Helix 4
AA4
A
217 226Right-handed alpha
Helix 5
AA5
A
228 250Right-handed alpha
Helix 6
AA6
A
267 276Right-handed alpha
Helix 7
AA7
A
403 415Right-handed alpha
Helix 8
AA8
A
444 449Right-handed alpha
Helix 9
AA9
A
450 455Right-handed 310
Helix 10
AB1
A
475 483Right-handed alpha
Helix 11
AB2
A
483 488Right-handed alpha
Helix 12
AB3
A
538 546Right-handed alpha
Helix 13
AB4
A
559 565Right-handed 310
Helix 14
AB5
A
566 568Right-handed 310
Helix 15
AB6
A
569 580Right-handed alpha
Helix 16
AB7
A
581 592Right-handed alpha
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There are 2 sheets in PDB entry 9C38. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 182first strand
Strand 2
A
129 135parallel
Strand 3
A
259 264parallel
Strand 4
A
394 400parallel
Strand 5
A
429 434parallel
Strand 6
A
553 555parallel
Strand 7
A
458 459parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
423 425anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il