Analysis of interatomic Contacts of Structural Units in PDB entry:
9C39

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C39 entry

There are 16 chains in PDB entry 9C39 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 17	PRO 454
B	GLY 17	PRO 454
C	THR 4	ARG 133
D	THR 4	GLY 132
E	MET 1	ASN 130
F	GLN 2	LYS 196
G	GLN 5	SER 146
H	TRP 2	TYR 449
I	THR 11	ASN 166
J	GLU 25	ASN 166
K	THR 3	LYS 110
L	THR 3	LYS 110
M	THR 3	LYS 110
N	THR 3	LYS 110
O	THR 3	LYS 110
P	THR 3	LYS 110

There are 71 helices in PDB entry 9C39. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	54	Right-handed alpha
Helix 2	AA2	A	54	69	Right-handed alpha
Helix 3	AA3	A	84	100	Right-handed alpha
Helix 4	AA4	A	104	113	Right-handed alpha
Helix 5	AA5	A	114	119	Right-handed alpha
Helix 6	AA6	A	200	202	Right-handed 310
Helix 7	AA7	A	220	224	Right-handed 310
Helix 8	AA8	A	225	245	Right-handed alpha
Helix 9	AA9	A	256	260	Right-handed 310
Helix 10	AB1	A	265	282	Right-handed alpha
Helix 11	AB2	A	319	335	Right-handed alpha
Helix 12	AB3	A	337	341	Right-handed 310
Helix 13	AB4	A	358	378	Right-handed alpha
Helix 14	AB5	A	379	387	Right-handed alpha
Helix 15	AB6	A	406	419	Right-handed alpha
Helix 16	AB7	A	426	438	Right-handed alpha
Helix 17	AB8	B	40	52	Right-handed alpha
Helix 18	AB9	B	54	71	Right-handed alpha
Helix 19	AC1	B	84	101	Right-handed alpha
Helix 20	AC2	B	104	113	Right-handed alpha
Helix 21	AC3	B	114	119	Right-handed alpha
Helix 22	AC4	B	200	202	Right-handed 310
Helix 23	AC5	B	220	224	Right-handed 310
Helix 24	AC6	B	225	245	Right-handed alpha
Helix 25	AC7	B	265	282	Right-handed alpha
Helix 26	AC8	B	319	336	Right-handed alpha
Helix 27	AC9	B	338	343	Right-handed alpha
Helix 28	AD1	B	358	375	Right-handed alpha
Helix 29	AD2	B	378	387	Right-handed alpha
Helix 30	AD3	B	406	419	Right-handed alpha
Helix 31	AD4	B	426	438	Right-handed alpha
Helix 32	AD5	C	10	20	Right-handed alpha
Helix 33	AD6	C	23	27	Right-handed 310
Helix 34	AD7	C	30	41	Right-handed alpha
Helix 35	AD8	C	44	63	Right-handed alpha
Helix 36	AD9	C	77	90	Right-handed alpha
Helix 37	AE1	C	106	112	Right-handed alpha
Helix 38	AE2	D	10	19	Right-handed alpha
Helix 39	AE3	D	30	41	Right-handed alpha
Helix 40	AE4	D	44	63	Right-handed alpha
Helix 41	AE5	D	75	77	Right-handed 310
Helix 42	AE6	D	78	90	Right-handed alpha
Helix 43	AE7	D	104	113	Right-handed alpha
Helix 44	AE8	E	2	6	Right-handed 310
Helix 45	AE9	F	4	20	Right-handed alpha
Helix 46	AF1	F	97	109	Right-handed alpha
Helix 47	AF2	F	111	120	Right-handed alpha
Helix 48	AF3	G	69	85	Right-handed alpha
Helix 49	AF4	H	43	49	Right-handed alpha
Helix 50	AF5	H	55	65	Right-handed alpha
Helix 51	AF6	H	123	133	Right-handed alpha
Helix 52	AF7	H	185	196	Right-handed alpha
Helix 53	AF8	H	208	222	Right-handed alpha
Helix 54	AF9	H	232	236	Right-handed 310
Helix 55	AG1	H	240	244	Right-handed 310
Helix 56	AG2	H	246	255	Right-handed alpha
Helix 57	AG3	H	272	281	Right-handed alpha
Helix 58	AG4	H	311	321	Right-handed alpha
Helix 59	AG5	H	345	368	Right-handed alpha
Helix 60	AG6	H	378	399	Right-handed alpha
Helix 61	AG7	H	411	415	Right-handed 310
Helix 62	AG8	H	416	423	Right-handed alpha
Helix 63	AG9	I	96	100	Right-handed 310
Helix 64	AH1	I	131	135	Right-handed 310
Helix 65	AH2	J	129	134	Right-handed alpha
Helix 66	AH3	K	5	14	Right-handed alpha
Helix 67	AH4	L	5	14	Right-handed alpha
Helix 68	AH5	M	5	13	Right-handed alpha
Helix 69	AH6	N	5	14	Right-handed alpha
Helix 70	AH7	O	5	14	Right-handed alpha
Helix 71	AH8	P	5	15	Right-handed alpha

There are 48 sheets in PDB entry 9C39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	76	first strand
Strand 2	A	396	399	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	204	206	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	146	148	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	173	174	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	254	first strand
Strand 2	A	306	309	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	309	first strand
Strand 2	B	251	255	anti-parallel
Strand 3	A	290	293	parallel
Strand 4	D	99	100	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	76	first strand
Strand 2	B	396	399	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	204	205	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	147	148	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	173	174	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	73	first strand
Strand 2	C	65	68	anti-parallel
Strand 3	D	71	74	anti-parallel
Strand 4	D	66	68	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	89	first strand
Strand 2	E	7	13	anti-parallel
Strand 3	E	34	44	anti-parallel
Strand 4	E	67	72	anti-parallel
Strand 5	E	114	121	anti-parallel
Strand 6	E	95	105	anti-parallel
Strand 7	E	91	92	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	27	28	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	58	first strand
Strand 2	E	61	65	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	36	first strand
Strand 2	F	54	59	parallel
Strand 3	F	79	94	anti-parallel
Strand 4	F	143	161	anti-parallel
Strand 5	F	125	129	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	74	first strand
Strand 2	F	79	94	anti-parallel
Strand 3	F	143	161	anti-parallel
Strand 4	F	135	138	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	187	194	first strand
Strand 2	F	169	177	anti-parallel
Strand 3	H	425	434	parallel
Strand 4	H	402	404	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	187	194	first strand
Strand 2	F	169	177	anti-parallel
Strand 3	H	425	434	parallel
Strand 4	H	407	408	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	15	first strand
Strand 2	G	96	98	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	34	first strand
Strand 2	G	59	66	anti-parallel
Strand 3	G	127	134	anti-parallel
Strand 4	G	113	115	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	G	49	50	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	106	109	first strand
Strand 2	G	136	139	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	78	first strand
Strand 2	H	25	29	parallel
Strand 3	H	201	204	parallel
Strand 4	H	225	228	parallel
Strand 5	H	259	261	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	83	84	first strand
Strand 2	H	156	159	anti-parallel
Strand 3	H	142	143	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	109	112	first strand
Strand 2	H	98	103	anti-parallel
Strand 3	H	166	169	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	326	328	first strand
Strand 2	H	333	335	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	23	29	first strand
Strand 2	N	99	107	parallel
Strand 3	N	52	54	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	23	29	first strand
Strand 2	N	99	107	parallel
Strand 3	N	59	61	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	33	40	first strand
Strand 2	M	97	107	anti-parallel
Strand 3	M	52	54	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	33	40	first strand
Strand 2	M	97	107	anti-parallel
Strand 3	M	59	63	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	51	58	first strand
Strand 2	I	81	88	parallel
Strand 3	I	123	127	anti-parallel
Strand 4	I	112	118	anti-parallel
Strand 5	I	103	106	anti-parallel
Strand 6	I	141	149	anti-parallel
Strand 7	I	155	164	anti-parallel
Strand 8	I	73	74	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	26	28	first strand
Strand 2	L	104	107	parallel
Strand 3	L	52	54	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	35	first strand
Strand 2	K	105	107	anti-parallel
Strand 3	K	52	54	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	54	55	first strand
Strand 2	J	82	85	parallel
Strand 3	J	123	127	anti-parallel
Strand 4	J	116	118	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	72	76	first strand
Strand 2	J	155	166	parallel
Strand 3	J	141	149	anti-parallel
Strand 4	J	102	105	anti-parallel
Strand 5	J	113	114	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	89	first strand
Strand 2	J	93	94	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	42	first strand
Strand 2	K	18	24	anti-parallel
Strand 3	K	67	76	anti-parallel
Strand 4	K	81	93	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	59	63	first strand
Strand 2	K	97	101	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	41	42	first strand
Strand 2	L	18	24	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	81	84	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	59	63	first strand
Strand 2	L	97	101	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	67	69	first strand
Strand 2	L	91	93	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	41	42	first strand
Strand 2	M	20	24	anti-parallel
Strand 3	M	67	75	anti-parallel
Strand 4	M	83	93	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	41	42	first strand
Strand 2	N	18	24	anti-parallel
Strand 3	N	67	76	anti-parallel
Strand 4	N	86	93	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	41	42	first strand
Strand 2	O	20	24	anti-parallel
Strand 3	O	67	75	anti-parallel
Strand 4	O	81	93	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	52	54	first strand
Strand 2	O	105	107	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	59	63	first strand
Strand 2	O	97	101	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	41	42	first strand
Strand 2	P	20	24	anti-parallel
Strand 3	P	71	75	anti-parallel
Strand 4	P	81	86	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	67	68	first strand
Strand 2	P	92	93	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C39

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C39