Analysis of interatomic Contacts of Structural Units in PDB entry:
9C3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C3D entry

There is 1 chain in PDB entry 9C3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 20GLN 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9C3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 90Right-handed alpha
Helix 2
AA2
A
104 109Right-handed alpha
Helix 3
AA3
A
110 117Right-handed alpha
Helix 4
AA4
A
125 135Right-handed alpha
Helix 5
AA5
A
184 186Right-handed 310
Helix 6
AA6
A
203 215Right-handed alpha
Helix 7
AA7
A
231 243Right-handed alpha
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There are 2 sheets in PDB entry 9C3D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
40 49anti-parallel
Strand 4
A
53 64anti-parallel
Strand 5
A
67 71anti-parallel
Strand 6
A
94 99parallel
Strand 7
A
121 124parallel
Strand 8
A
141 143parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 151first strand
Strand 2
A
154 159anti-parallel
Strand 3
A
171 174anti-parallel
Strand 4
A
179 183anti-parallel
Strand 5
A
220 223parallel
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