Analysis of interatomic Contacts of Structural Units in PDB entry:
9C3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C3J entry

There are 3 chains in PDB entry 9C3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 54GLY 269
B
 ALA 29ASN 240
C
 GLY 1GLN 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9C3J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 64Right-handed alpha
Helix 2
AA2
A
100 108Right-handed alpha
Helix 3
AA3
A
160 165Right-handed 310
Helix 4
AA4
B
90 99Right-handed alpha
Helix 5
AA5
B
142 147Right-handed alpha
Helix 6
AA6
B
148 152Right-handed 310
Helix 7
AA7
B
167 173Right-handed 310
Helix 8
AA8
C
43 48Right-handed alpha
Helix 9
AA9
C
62 67Right-handed 310
Helix 10
AB1
C
97 104Right-handed alpha
Helix 11
AB2
C
143 150Right-handed alpha
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There are 11 sheets in PDB entry 9C3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
234 251anti-parallel
Strand 3
A
110 126anti-parallel
Strand 4
A
180 184anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
234 251anti-parallel
Strand 3
A
110 126anti-parallel
Strand 4
A
193 194anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
218 224anti-parallel
Strand 3
A
142 149anti-parallel
Strand 4
A
169 174anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
226 232anti-parallel
Strand 3
B
69 71anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
226 232anti-parallel
Strand 3
B
107 112anti-parallel
Strand 4
B
185 189anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
207 218anti-parallel
Strand 3
B
119 128anti-parallel
Strand 4
B
175 179anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
238 239anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
209 218anti-parallel
Strand 3
C
69 72anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
209 218anti-parallel
Strand 3
C
113 119anti-parallel
Strand 4
C
162 166anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
191 196anti-parallel
Strand 3
C
128 134anti-parallel
Strand 4
C
152 156anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 171first strand
Strand 2
C
108 111anti-parallel
Strand 3
C
223 225anti-parallel
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