Analysis of interatomic Contacts of Structural Units in PDB entry:
9C47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C47 entry

There are 2 chains in PDB entry 9C47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASN 242LEU 3859
G
 PRO 2366ALA 2523
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are193 helices in PDB entry 9C47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
243 255Right-handed alpha
Helix 2
AA2
C
278 293Right-handed alpha
Helix 3
AA3
C
307 320Right-handed alpha
Helix 4
AA4
C
324 339Right-handed alpha
Helix 5
AA5
C
340 342Right-handed 310
Helix 6
AA6
C
346 352Right-handed alpha
Helix 7
AA7
C
354 358Right-handed 310
Helix 8
AA8
C
364 387Right-handed alpha
Helix 9
AA9
C
388 390Right-handed 310
Helix 10
AB1
C
391 408Right-handed alpha
Helix 11
AB2
C
412 437Right-handed alpha
Helix 12
AB3
C
440 463Right-handed alpha
Helix 13
AB4
C
464 467Right-handed 310
Helix 14
AB5
C
542 566Right-handed alpha
Helix 15
AB6
C
582 600Right-handed alpha
Helix 16
AB7
C
601 605Right-handed 310
Helix 17
AB8
C
626 639Right-handed alpha
Helix 18
AB9
C
643 665Right-handed alpha
Helix 19
AC1
C
668 676Right-handed alpha
Helix 20
AC2
C
680 697Right-handed alpha
Helix 21
AC3
C
698 700Right-handed 310
Helix 22
AC4
C
703 724Right-handed alpha
Helix 23
AC5
C
728 733Right-handed alpha
Helix 24
AC6
C
735 750Right-handed alpha
Helix 25
AC7
C
753 768Right-handed alpha
Helix 26
AC8
C
774 780Right-handed alpha
Helix 27
AC9
C
782 796Right-handed alpha
Helix 28
AD1
C
799 811Right-handed alpha
Helix 29
AD2
C
820 822Right-handed 310
Helix 30
AD3
C
823 836Right-handed alpha
Helix 31
AD4
C
838 856Right-handed alpha
Helix 32
AD5
C
857 866Right-handed alpha
Helix 33
AD6
C
868 881Right-handed alpha
Helix 34
AD7
C
884 898Right-handed alpha
Helix 35
AD8
C
929 932Right-handed 310
Helix 36
AD9
C
939 952Right-handed alpha
Helix 37
AE1
C
956 975Right-handed alpha
Helix 38
AE2
C
980 989Right-handed alpha
Helix 39
AE3
C
1004 1008Right-handed 310
Helix 40
AE4
C
1012 1031Right-handed alpha
Helix 41
AE5
C
1034 1058Right-handed alpha
Helix 42
AE6
C
1063 1067Right-handed 310
Helix 43
AE7
C
1073 1077Right-handed 310
Helix 44
AE8
C
1090 1102Right-handed alpha
Helix 45
AE9
C
1106 1127Right-handed alpha
Helix 46
AF1
C
1128 1134Right-handed alpha
Helix 47
AF2
C
1135 1148Right-handed alpha
Helix 48
AF3
C
1149 1151Right-handed 310
Helix 49
AF4
C
1153 1171Right-handed alpha
Helix 50
AF5
C
1172 1179Right-handed alpha
Helix 51
AF6
C
1179 1194Right-handed alpha
Helix 52
AF7
C
1202 1219Right-handed alpha
Helix 53
AF8
C
1227 1248Right-handed alpha
Helix 54
AF9
C
1253 1271Right-handed alpha
Helix 55
AG1
C
1274 1280Right-handed alpha
Helix 56
AG2
C
1282 1287Right-handed alpha
Helix 57
AG3
C
1301 1318Right-handed alpha
Helix 58
AG4
C
1332 1345Right-handed alpha
Helix 59
AG5
C
1347 1352Right-handed alpha
Helix 60
AG6
C
1355 1359Right-handed 310
Helix 61
AG7
C
1362 1376Right-handed alpha
Helix 62
AG8
C
1379 1395Right-handed alpha
Helix 63
AG9
C
1398 1416Right-handed alpha
Helix 64
AH1
C
1419 1427Right-handed alpha
Helix 65
AH2
C
1427 1433Right-handed alpha
Helix 66
AH3
C
1434 1435Right-handed 310
Helix 67
AH4
C
1436 1440Right-handed 310
Helix 68
AH5
C
1441 1453Right-handed alpha
Helix 69
AH6
C
1455 1459Right-handed 310
Helix 70
AH7
C
1460 1483Right-handed alpha
Helix 71
AH8
C
1510 1524Right-handed alpha
Helix 72
AH9
C
1528 1530Right-handed 310
Helix 73
AI1
C
1531 1547Right-handed alpha
Helix 74
AI2
C
1554 1565Right-handed alpha
Helix 75
AI3
C
1565 1574Right-handed alpha
Helix 76
AI4
C
1575 1581Right-handed alpha
Helix 77
AI5
C
1581 1594Right-handed alpha
Helix 78
AI6
C
1596 1607Right-handed alpha
Helix 79
AI7
C
1607 1616Right-handed alpha
Helix 80
AI8
C
1636 1653Right-handed alpha
Helix 81
AI9
C
1661 1674Right-handed alpha
Helix 82
AJ1
C
1675 1679Right-handed 310
Helix 83
AJ2
C
1691 1707Right-handed alpha
Helix 84
AJ3
C
1710 1721Right-handed alpha
Helix 85
AJ4
C
1732 1740Right-handed alpha
Helix 86
AJ5
C
1749 1760Right-handed alpha
Helix 87
AJ6
C
1766 1782Right-handed alpha
Helix 88
AJ7
C
1805 1815Right-handed alpha
Helix 89
AJ8
C
1826 1843Right-handed alpha
Helix 90
AJ9
C
1858 1862Right-handed alpha
Helix 91
AK1
C
1865 1870Right-handed alpha
Helix 92
AK2
C
1876 1891Right-handed alpha
Helix 93
AK3
C
1897 1910Right-handed alpha
Helix 94
AK4
C
1913 1928Right-handed alpha
Helix 95
AK5
C
1930 1938Right-handed alpha
Helix 96
AK6
C
1941 1953Right-handed alpha
Helix 97
AK7
C
1961 1971Right-handed alpha
Helix 98
AK8
C
1980 1994Right-handed alpha
Helix 99
AK9
C
2002 2020Right-handed alpha
Helix 100
AL1
C
2091 2108Right-handed alpha
Helix 101
AL2
C
2123 2132Right-handed alpha
Helix 102
AL3
C
2143 2155Right-handed alpha
Helix 103
AL4
C
2163 2183Right-handed alpha
Helix 104
AL5
C
2184 2190Right-handed alpha
Helix 105
AL6
C
2190 2198Right-handed alpha
Helix 106
AL7
C
2199 2205Right-handed alpha
Helix 107
AL8
C
2208 2223Right-handed alpha
Helix 108
AL9
C
2237 2253Right-handed alpha
Helix 109
AM1
C
2266 2282Right-handed alpha
Helix 110
AM2
C
2287 2305Right-handed alpha
Helix 111
AM3
C
2317 2334Right-handed alpha
Helix 112
AM4
C
2346 2357Right-handed alpha
Helix 113
AM5
C
2360 2377Right-handed alpha
Helix 114
AM6
C
2388 2407Right-handed alpha
Helix 115
AM7
C
2411 2427Right-handed alpha
Helix 116
AM8
C
2436 2438Right-handed 310
Helix 117
AM9
C
2439 2449Right-handed alpha
Helix 118
AN1
C
2451 2465Right-handed alpha
Helix 119
AN2
C
2469 2479Right-handed alpha
Helix 120
AN3
C
2483 2487Right-handed 310
Helix 121
AN4
C
2491 2501Right-handed alpha
Helix 122
AN5
C
2513 2517Right-handed 310
Helix 123
AN6
C
2522 2528Right-handed alpha
Helix 124
AN7
C
2587 2604Right-handed alpha
Helix 125
AN8
C
2606 2621Right-handed alpha
Helix 126
AN9
C
2621 2640Right-handed alpha
Helix 127
AO1
C
2641 2657Right-handed alpha
Helix 128
AO2
C
2659 2665Right-handed 310
Helix 129
AO3
C
2670 2681Right-handed alpha
Helix 130
AO4
C
2689 2700Right-handed alpha
Helix 131
AO5
C
2702 2717Right-handed alpha
Helix 132
AO6
C
2742 2756Right-handed alpha
Helix 133
AO7
C
2757 2769Right-handed alpha
Helix 134
AO8
C
2771 2784Right-handed alpha
Helix 135
AO9
C
2785 2807Right-handed alpha
Helix 136
AP1
C
2810 2812Right-handed 310
Helix 137
AP2
C
2813 2831Right-handed alpha
Helix 138
AP3
C
2833 2842Right-handed alpha
Helix 139
AP4
C
2848 2857Right-handed alpha
Helix 140
AP5
C
2861 2874Right-handed alpha
Helix 141
AP6
C
2879 2894Right-handed alpha
Helix 142
AP7
C
2903 2920Right-handed alpha
Helix 143
AP8
C
2927 2929Right-handed 310
Helix 144
AP9
C
2930 2954Right-handed alpha
Helix 145
AQ1
C
2960 2977Right-handed alpha
Helix 146
AQ2
C
2984 3007Right-handed alpha
Helix 147
AQ3
C
3028 3051Right-handed alpha
Helix 148
AQ4
C
3053 3064Right-handed alpha
Helix 149
AQ5
C
3065 3067Right-handed 310
Helix 150
AQ6
C
3071 3089Right-handed alpha
Helix 151
AQ7
C
3097 3108Right-handed alpha
Helix 152
AQ8
C
3114 3132Right-handed alpha
Helix 153
AQ9
C
3135 3150Right-handed alpha
Helix 154
AR1
C
3152 3169Right-handed alpha
Helix 155
AR2
C
3172 3190Right-handed alpha
Helix 156
AR3
C
3195 3206Right-handed alpha
Helix 157
AR4
C
3207 3209Right-handed 310
Helix 158
AR5
C
3213 3223Right-handed alpha
Helix 159
AR6
C
3227 3233Right-handed 310
Helix 160
AR7
C
3234 3244Right-handed alpha
Helix 161
AR8
C
3246 3261Right-handed alpha
Helix 162
AR9
C
3261 3282Right-handed alpha
Helix 163
AS1
C
3294 3310Right-handed alpha
Helix 164
AS2
C
3311 3326Right-handed alpha
Helix 165
AS3
C
3327 3329Right-handed 310
Helix 166
AS4
C
3331 3354Right-handed alpha
Helix 167
AS5
C
3364 3379Right-handed alpha
Helix 168
AS6
C
3416 3426Right-handed alpha
Helix 169
AS7
C
3433 3454Right-handed alpha
Helix 170
AS8
C
3466 3471Right-handed alpha
Helix 171
AS9
C
3535 3559Right-handed alpha
Helix 172
AT1
C
3559 3564Right-handed alpha
Helix 173
AT2
C
3593 3604Right-handed alpha
Helix 174
AT3
C
3609 3626Right-handed alpha
Helix 175
AT4
C
3630 3645Right-handed alpha
Helix 176
AT5
C
3649 3659Right-handed alpha
Helix 177
AT6
C
3661 3686Right-handed alpha
Helix 178
AT7
C
3732 3738Right-handed alpha
Helix 179
AT8
C
3746 3761Right-handed alpha
Helix 180
AT9
C
3765 3786Right-handed alpha
Helix 181
AU1
C
3805 3827Right-handed alpha
Helix 182
AU2
C
3834 3844Right-handed alpha
Helix 183
AU3
C
3844 3849Right-handed alpha
Helix 184
AU4
C
3850 3851Right-handed 310
Helix 185
AU5
C
3852 3856Right-handed 310
Helix 186
AU6
G
2370 2382Right-handed alpha
Helix 187
AU7
G
2400 2410Right-handed alpha
Helix 188
AU8
G
2417 2428Right-handed alpha
Helix 189
AU9
G
2428 2435Right-handed alpha
Helix 190
AV1
G
2444 2453Right-handed alpha
Helix 191
AV2
G
2454 2474Right-handed alpha
Helix 192
AV3
G
2496 2501Right-handed alpha
Helix 193
AV4
G
2510 2523Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9C47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
923 927first strand
Strand 2
C
934 938anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3458 3460first strand
Strand 2
C
3496 3508anti-parallel
Strand 3
C
3511 3520anti-parallel
Strand 4
C
3525 3532anti-parallel
Strand 5
C
3581 3584anti-parallel
Strand 6
C
3574 3575anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3590 3592first strand
Strand 2
C
3696 3699anti-parallel
Strand 3
C
3705 3707anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il