Analysis of interatomic Contacts of Structural Units in PDB entry:
9C49

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C49 entry

There are 2 chains in PDB entry 9C49 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 192	PRO 511
B	ARG 192	PRO 511

There are 16 helices in PDB entry 9C49. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	195	199	Right-handed 310
Helix 2	AA2	A	228	239	Right-handed alpha
Helix 3	AA3	A	275	293	Right-handed alpha
Helix 4	AA4	A	307	321	Right-handed alpha
Helix 5	AA5	A	351	367	Right-handed alpha
Helix 6	AA6	A	459	463	Right-handed 310
Helix 7	AA7	A	472	474	Right-handed 310
Helix 8	AA8	A	491	495	Right-handed 310
Helix 9	AA9	B	195	199	Right-handed 310
Helix 10	AB1	B	228	239	Right-handed alpha
Helix 11	AB2	B	275	293	Right-handed alpha
Helix 12	AB3	B	307	321	Right-handed alpha
Helix 13	AB4	B	351	367	Right-handed alpha
Helix 14	AB5	B	459	463	Right-handed 310
Helix 15	AB6	B	472	474	Right-handed 310
Helix 16	AB7	B	491	495	Right-handed 310

There are 12 sheets in PDB entry 9C49. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	207	first strand
Strand 2	A	210	214	anti-parallel
Strand 3	A	297	302	parallel
Strand 4	A	243	247	parallel
Strand 5	A	263	265	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	226	227	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	423	first strand
Strand 2	A	434	435	anti-parallel
Strand 3	A	377	386	anti-parallel
Strand 4	A	441	443	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	423	first strand
Strand 2	A	434	435	anti-parallel
Strand 3	A	377	386	anti-parallel
Strand 4	A	503	509	anti-parallel
Strand 5	A	478	482	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	414	first strand
Strand 2	A	400	404	anti-parallel
Strand 3	A	445	451	anti-parallel
Strand 4	A	465	466	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	414	first strand
Strand 2	A	400	404	anti-parallel
Strand 3	A	445	451	anti-parallel
Strand 4	A	469	470	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	207	first strand
Strand 2	B	210	214	anti-parallel
Strand 3	B	297	302	parallel
Strand 4	B	243	247	parallel
Strand 5	B	263	265	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	226	227	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	423	first strand
Strand 2	B	434	435	anti-parallel
Strand 3	B	377	386	anti-parallel
Strand 4	B	441	443	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	423	first strand
Strand 2	B	434	435	anti-parallel
Strand 3	B	377	386	anti-parallel
Strand 4	B	503	509	anti-parallel
Strand 5	B	478	482	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	414	first strand
Strand 2	B	399	404	anti-parallel
Strand 3	B	445	452	anti-parallel
Strand 4	B	465	466	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	414	first strand
Strand 2	B	399	404	anti-parallel
Strand 3	B	445	452	anti-parallel
Strand 4	B	469	470	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C49

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C49