Analysis of interatomic Contacts of Structural Units in PDB entry:
9C4B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C4B entry

There is 1 chain in PDB entry 9C4B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 11PRO 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9C4B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 77Right-handed alpha
Helix 2
AA2
A
95 109Right-handed alpha
Helix 3
AA3
A
129 143Right-handed alpha
Helix 4
AA4
A
154 163Right-handed alpha
Helix 5
AA5
A
189 192Right-handed 310
Helix 6
AA6
A
198 210Right-handed alpha
Helix 7
AA7
A
247 267Right-handed alpha
Helix 8
AA8
A
299 304Right-handed alpha
Helix 9
AA9
A
305 309Right-handed 310
Helix 10
AB1
A
324 336Right-handed alpha
Helix 11
AB2
A
340 345Right-handed alpha
Helix 12
AB3
A
352 356Right-handed 310
Helix 13
AB4
A
359 372Right-handed alpha
Helix 14
AB5
A
385 391Right-handed alpha
Helix 15
AB6
A
391 403Right-handed alpha
Helix 16
AB7
A
405 410Right-handed alpha
Helix 17
AB8
A
413 419Right-handed alpha
Helix 18
AB9
A
422 428Right-handed alpha
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There are 3 sheets in PDB entry 9C4B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
22 27anti-parallel
Strand 3
A
14 18anti-parallel
Strand 4
A
120 124parallel
Strand 5
A
148 153parallel
Strand 6
A
411 412anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
177 183anti-parallel
Strand 3
A
193 195anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
177 183anti-parallel
Strand 3
A
167 172anti-parallel
Strand 4
A
348 350parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il