Analysis of interatomic Contacts of Structural Units in PDB entry:
9C52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C52 entry

There are 4 chains in PDB entry 9C52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 35SER 1045
N
 G 9 T 13
T
 A 11 T 38
P
 A 3 G 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9C52. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 59Right-handed alpha
Helix 2
AA2
A
66 84Right-handed alpha
Helix 3
AA3
A
108 129Right-handed alpha
Helix 4
AA4
A
226 232Right-handed alpha
Helix 5
AA5
A
233 238Right-handed 310
Helix 6
AA6
A
250 257Right-handed alpha
Helix 7
AA7
A
266 281Right-handed alpha
Helix 8
AA8
A
289 294Right-handed alpha
Helix 9
AA9
A
295 299Right-handed 310
Helix 10
AB1
A
304 313Right-handed alpha
Helix 11
AB2
A
319 327Right-handed 310
Helix 12
AB3
A
330 335Right-handed alpha
Helix 13
AB4
A
336 366Right-handed alpha
Helix 14
AB5
A
368 378Right-handed alpha
Helix 15
AB6
A
386 420Right-handed alpha
Helix 16
AB7
A
426 431Right-handed alpha
Helix 17
AB8
A
434 438Right-handed 310
Helix 18
AB9
A
463 470Right-handed alpha
Helix 19
AC1
A
486 491Right-handed alpha
Helix 20
AC2
A
513 515Right-handed 310
Helix 21
AC3
A
516 521Right-handed alpha
Helix 22
AC4
A
522 524Right-handed 310
Helix 23
AC5
A
529 542Right-handed alpha
Helix 24
AC6
A
570 577Right-handed alpha
Helix 25
AC7
A
586 609Right-handed alpha
Helix 26
AC8
A
676 681Right-handed 310
Helix 27
AC9
A
696 708Right-handed alpha
Helix 28
AD1
A
716 724Right-handed alpha
Helix 29
AD2
A
726 730Right-handed 310
Helix 30
AD3
A
732 742Right-handed alpha
Helix 31
AD4
A
744 757Right-handed alpha
Helix 32
AD5
A
760 772Right-handed alpha
Helix 33
AD6
A
776 792Right-handed alpha
Helix 34
AD7
A
810 822Right-handed alpha
Helix 35
AD8
A
836 840Right-handed 310
Helix 36
AD9
A
849 881Right-handed alpha
Helix 37
AE1
A
902 925Right-handed alpha
Helix 38
AE2
A
970 977Right-handed alpha
Helix 39
AE3
A
978 981Right-handed 310
Helix 40
AE4
A
986 994Right-handed alpha
Helix 41
AE5
A
1003 1010Right-handed alpha
Helix 42
AE6
A
1013 1025Right-handed alpha
Helix 43
AE7
A
1028 1045Right-handed alpha
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There are 6 sheets in PDB entry 9C52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
147 151anti-parallel
Strand 3
A
193 197anti-parallel
Strand 4
A
182 188anti-parallel
Strand 5
A
167 174anti-parallel
Strand 6
A
220 224parallel
Strand 7
A
245 249parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 385first strand
Strand 2
A
641 643anti-parallel
Strand 3
A
614 615anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 495first strand
Strand 2
A
581 583anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 503first strand
Strand 2
A
507 512anti-parallel
Strand 3
A
550 553anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
884 890first strand
Strand 2
A
893 899anti-parallel
Strand 3
A
687 693anti-parallel
Strand 4
A
940 943anti-parallel
Strand 5
A
967 969anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
794 796first strand
Strand 2
A
804 806anti-parallel
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