Analysis of interatomic Contacts of Structural Units in PDB entry:
9C53


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C53 entry

There are 4 chains in PDB entry 9C53 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 35SER 1045
N
 T 10 T 13
P
 A 5 G 23
T
 A 11 T 36
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9C53. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 59Right-handed alpha
Helix 2
AA2
A
66 85Right-handed alpha
Helix 3
AA3
A
108 121Right-handed alpha
Helix 4
AA4
A
122 129Right-handed alpha
Helix 5
AA5
A
199 203Right-handed 310
Helix 6
AA6
A
227 232Right-handed alpha
Helix 7
AA7
A
233 238Right-handed 310
Helix 8
AA8
A
250 257Right-handed alpha
Helix 9
AA9
A
265 281Right-handed alpha
Helix 10
AB1
A
289 294Right-handed alpha
Helix 11
AB2
A
295 299Right-handed 310
Helix 12
AB3
A
304 313Right-handed alpha
Helix 13
AB4
A
320 327Right-handed 310
Helix 14
AB5
A
330 335Right-handed alpha
Helix 15
AB6
A
336 366Right-handed alpha
Helix 16
AB7
A
368 379Right-handed alpha
Helix 17
AB8
A
386 420Right-handed alpha
Helix 18
AB9
A
425 432Right-handed alpha
Helix 19
AC1
A
463 470Right-handed alpha
Helix 20
AC2
A
486 491Right-handed alpha
Helix 21
AC3
A
516 523Right-handed alpha
Helix 22
AC4
A
529 544Right-handed alpha
Helix 23
AC5
A
569 571Right-handed 310
Helix 24
AC6
A
572 577Right-handed alpha
Helix 25
AC7
A
586 609Right-handed alpha
Helix 26
AC8
A
676 681Right-handed 310
Helix 27
AC9
A
696 708Right-handed alpha
Helix 28
AD1
A
716 723Right-handed alpha
Helix 29
AD2
A
732 742Right-handed alpha
Helix 30
AD3
A
744 757Right-handed alpha
Helix 31
AD4
A
760 772Right-handed alpha
Helix 32
AD5
A
776 792Right-handed alpha
Helix 33
AD6
A
810 822Right-handed alpha
Helix 34
AD7
A
836 844Right-handed 310
Helix 35
AD8
A
849 881Right-handed alpha
Helix 36
AD9
A
902 925Right-handed alpha
Helix 37
AE1
A
970 977Right-handed alpha
Helix 38
AE2
A
986 994Right-handed alpha
Helix 39
AE3
A
1003 1010Right-handed alpha
Helix 40
AE4
A
1013 1026Right-handed alpha
Helix 41
AE5
A
1028 1045Right-handed alpha
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There are 6 sheets in PDB entry 9C53. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
147 151anti-parallel
Strand 3
A
193 197anti-parallel
Strand 4
A
182 188anti-parallel
Strand 5
A
167 174anti-parallel
Strand 6
A
220 224parallel
Strand 7
A
245 249parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 385first strand
Strand 2
A
641 643anti-parallel
Strand 3
A
614 615anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
581 582anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 503first strand
Strand 2
A
507 512anti-parallel
Strand 3
A
550 553anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
884 888first strand
Strand 2
A
893 899anti-parallel
Strand 3
A
687 693anti-parallel
Strand 4
A
940 943anti-parallel
Strand 5
A
967 969anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
794 797first strand
Strand 2
A
803 806anti-parallel
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