Analysis of interatomic Contacts of Structural Units in PDB entry:
9C54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C54 entry

There is 1 chain in PDB entry 9C54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ASP 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9C54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
17 29Right-handed alpha
Helix 3
AA3
A
35 46Right-handed 310
Helix 4
AA4
A
77 80Right-handed 310
Helix 5
AA5
A
93 104Right-handed alpha
Helix 6
AA6
A
188 202Right-handed alpha
Helix 7
AA7
A
221 238Right-handed alpha
Helix 8
AA8
A
243 253Right-handed alpha
Helix 9
AA9
A
261 277Right-handed alpha
Helix 10
AB1
A
286 294Right-handed alpha
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There are 2 sheets in PDB entry 9C54. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
68 76anti-parallel
Strand 3
A
81 86anti-parallel
Strand 4
A
212 215parallel
Strand 5
A
108 111parallel
Strand 6
A
169 177parallel
Strand 7
A
154 163anti-parallel
Strand 8
A
141 150anti-parallel
Strand 9
A
134 136anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
120 121anti-parallel
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