Analysis of interatomic Contacts of Structural Units in PDB entry:
9C59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C59 entry

There are 14 chains in PDB entry 9C59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	ASN 605
B	GLY 35	ASN 650
M	MET 1	THR 418
S	MET 1	GLU 151
A	MET 18	LYS 181
C	GLY 2	LYS 181
Y	SER 410	ILE 417
d	MET 1	ASN 605
b	GLY 35	ASN 650
m	MET 1	THR 418
s	MET 1	GLU 151
a	MET 18	LYS 181
c	GLY 2	LYS 181
y	SER 410	ILE 417

There are218 helices in PDB entry 9C59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	1	14	Right-handed alpha
Helix 2	AA2	D	17	28	Right-handed alpha
Helix 3	AA3	D	31	49	Right-handed alpha
Helix 4	AA4	D	51	68	Right-handed alpha
Helix 5	AA5	D	72	74	Right-handed 310
Helix 6	AA6	D	75	84	Right-handed alpha
Helix 7	AA7	D	87	102	Right-handed alpha
Helix 8	AA8	D	107	112	Right-handed alpha
Helix 9	AA9	D	112	122	Right-handed alpha
Helix 10	AB1	D	124	138	Right-handed alpha
Helix 11	AB2	D	140	155	Right-handed alpha
Helix 12	AB3	D	159	177	Right-handed alpha
Helix 13	AB4	D	177	192	Right-handed alpha
Helix 14	AB5	D	196	214	Right-handed alpha
Helix 15	AB6	D	221	232	Right-handed alpha
Helix 16	AB7	D	234	249	Right-handed alpha
Helix 17	AB8	D	252	270	Right-handed alpha
Helix 18	AB9	D	272	291	Right-handed alpha
Helix 19	AC1	D	296	314	Right-handed alpha
Helix 20	AC2	D	316	332	Right-handed alpha
Helix 21	AC3	D	334	339	Right-handed alpha
Helix 22	AC4	D	341	349	Right-handed alpha
Helix 23	AC5	D	353	368	Right-handed alpha
Helix 24	AC6	D	372	387	Right-handed alpha
Helix 25	AC7	D	389	410	Right-handed alpha
Helix 26	AC8	D	414	427	Right-handed alpha
Helix 27	AC9	D	433	448	Right-handed alpha
Helix 28	AD1	D	451	465	Right-handed alpha
Helix 29	AD2	D	465	470	Right-handed alpha
Helix 30	AD3	D	478	492	Right-handed alpha
Helix 31	AD4	D	493	496	Right-handed 310
Helix 32	AD5	D	498	507	Right-handed alpha
Helix 33	AD6	D	508	514	Right-handed 310
Helix 34	AD7	D	515	541	Right-handed alpha
Helix 35	AD8	D	542	555	Right-handed alpha
Helix 36	AD9	D	556	561	Right-handed alpha
Helix 37	AE1	D	565	588	Right-handed alpha
Helix 38	AE2	D	592	602	Right-handed alpha
Helix 39	AE3	B	39	53	Right-handed alpha
Helix 40	AE4	B	55	72	Right-handed alpha
Helix 41	AE5	B	76	78	Right-handed 310
Helix 42	AE6	B	79	85	Right-handed alpha
Helix 43	AE7	B	91	106	Right-handed alpha
Helix 44	AE8	B	109	114	Right-handed alpha
Helix 45	AE9	B	116	124	Right-handed alpha
Helix 46	AF1	B	128	142	Right-handed alpha
Helix 47	AF2	B	144	146	Right-handed 310
Helix 48	AF3	B	147	159	Right-handed alpha
Helix 49	AF4	B	163	181	Right-handed alpha
Helix 50	AF5	B	184	197	Right-handed alpha
Helix 51	AF6	B	203	215	Right-handed alpha
Helix 52	AF7	B	218	223	Right-handed alpha
Helix 53	AF8	B	225	233	Right-handed alpha
Helix 54	AF9	B	237	256	Right-handed alpha
Helix 55	AG1	B	294	305	Right-handed alpha
Helix 56	AG2	B	306	310	Right-handed 310
Helix 57	AG3	B	312	326	Right-handed alpha
Helix 58	AG4	B	331	333	Right-handed 310
Helix 59	AG5	B	334	342	Right-handed alpha
Helix 60	AG6	B	343	345	Right-handed 310
Helix 61	AG7	B	346	362	Right-handed alpha
Helix 62	AG8	B	365	376	Right-handed 310
Helix 63	AG9	B	382	397	Right-handed alpha
Helix 64	AH1	B	401	414	Right-handed alpha
Helix 65	AH2	B	417	435	Right-handed alpha
Helix 66	AH3	B	438	451	Right-handed alpha
Helix 67	AH4	B	454	472	Right-handed alpha
Helix 68	AH5	B	476	488	Right-handed alpha
Helix 69	AH6	B	492	506	Right-handed alpha
Helix 70	AH7	B	507	510	Right-handed 310
Helix 71	AH8	B	513	525	Right-handed alpha
Helix 72	AH9	B	526	528	Right-handed 310
Helix 73	AI1	B	529	564	Right-handed alpha
Helix 74	AI2	B	567	582	Right-handed alpha
Helix 75	AI3	B	588	593	Right-handed alpha
Helix 76	AI4	B	593	599	Right-handed alpha
Helix 77	AI5	B	609	615	Right-handed 310
Helix 78	AI6	B	621	627	Right-handed alpha
Helix 79	AI7	B	645	650	Right-handed 310
Helix 80	AI8	M	25	27	Right-handed 310
Helix 81	AI9	M	28	39	Right-handed alpha
Helix 82	AJ1	M	41	45	Right-handed 310
Helix 83	AJ2	M	75	95	Right-handed alpha
Helix 84	AJ3	M	98	105	Right-handed alpha
Helix 85	AJ4	M	105	116	Right-handed alpha
Helix 86	AJ5	M	126	134	Right-handed alpha
Helix 87	AJ6	M	138	149	Right-handed alpha
Helix 88	AJ7	M	158	163	Right-handed alpha
Helix 89	AJ8	M	224	226	Right-handed 310
Helix 90	AJ9	M	238	246	Right-handed alpha
Helix 91	AK1	S	24	41	Right-handed alpha
Helix 92	AK2	S	82	102	Right-handed alpha
Helix 93	AK3	S	105	112	Right-handed alpha
Helix 94	AK4	S	112	123	Right-handed alpha
Helix 95	AK5	S	133	151	Right-handed alpha
Helix 96	AK6	A	29	40	Right-handed alpha
Helix 97	AK7	A	74	83	Right-handed 310
Helix 98	AK8	A	96	98	Right-handed 310
Helix 99	AK9	A	99	112	Right-handed alpha
Helix 100	AL1	A	135	144	Right-handed alpha
Helix 101	AL2	A	145	148	Right-handed 310
Helix 102	AL3	A	165	178	Right-handed alpha
Helix 103	AL4	C	4	12	Right-handed alpha
Helix 104	AL5	C	29	39	Right-handed alpha
Helix 105	AL6	C	71	82	Right-handed 310
Helix 106	AL7	C	99	112	Right-handed alpha
Helix 107	AL8	C	114	119	Right-handed 310
Helix 108	AL9	C	135	144	Right-handed alpha
Helix 109	AM1	C	165	178	Right-handed alpha
Helix 110	AM2	d	2	14	Right-handed alpha
Helix 111	AM3	d	17	28	Right-handed alpha
Helix 112	AM4	d	31	49	Right-handed alpha
Helix 113	AM5	d	51	68	Right-handed alpha
Helix 114	AM6	d	72	74	Right-handed 310
Helix 115	AM7	d	75	84	Right-handed alpha
Helix 116	AM8	d	87	102	Right-handed alpha
Helix 117	AM9	d	107	112	Right-handed alpha
Helix 118	AN1	d	112	122	Right-handed alpha
Helix 119	AN2	d	124	138	Right-handed alpha
Helix 120	AN3	d	140	155	Right-handed alpha
Helix 121	AN4	d	159	177	Right-handed alpha
Helix 122	AN5	d	177	192	Right-handed alpha
Helix 123	AN6	d	196	214	Right-handed alpha
Helix 124	AN7	d	221	232	Right-handed alpha
Helix 125	AN8	d	234	249	Right-handed alpha
Helix 126	AN9	d	252	270	Right-handed alpha
Helix 127	AO1	d	272	291	Right-handed alpha
Helix 128	AO2	d	296	314	Right-handed alpha
Helix 129	AO3	d	316	332	Right-handed alpha
Helix 130	AO4	d	334	339	Right-handed alpha
Helix 131	AO5	d	341	349	Right-handed alpha
Helix 132	AO6	d	353	368	Right-handed alpha
Helix 133	AO7	d	372	387	Right-handed alpha
Helix 134	AO8	d	389	410	Right-handed alpha
Helix 135	AO9	d	414	427	Right-handed alpha
Helix 136	AP1	d	433	448	Right-handed alpha
Helix 137	AP2	d	451	465	Right-handed alpha
Helix 138	AP3	d	465	470	Right-handed alpha
Helix 139	AP4	d	478	492	Right-handed alpha
Helix 140	AP5	d	493	496	Right-handed 310
Helix 141	AP6	d	498	507	Right-handed alpha
Helix 142	AP7	d	508	514	Right-handed 310
Helix 143	AP8	d	515	541	Right-handed alpha
Helix 144	AP9	d	542	555	Right-handed alpha
Helix 145	AQ1	d	556	561	Right-handed alpha
Helix 146	AQ2	d	565	588	Right-handed alpha
Helix 147	AQ3	d	592	602	Right-handed alpha
Helix 148	AQ4	b	39	53	Right-handed alpha
Helix 149	AQ5	b	55	72	Right-handed alpha
Helix 150	AQ6	b	76	78	Right-handed 310
Helix 151	AQ7	b	79	85	Right-handed alpha
Helix 152	AQ8	b	91	106	Right-handed alpha
Helix 153	AQ9	b	109	114	Right-handed alpha
Helix 154	AR1	b	116	124	Right-handed alpha
Helix 155	AR2	b	128	142	Right-handed alpha
Helix 156	AR3	b	144	146	Right-handed 310
Helix 157	AR4	b	147	159	Right-handed alpha
Helix 158	AR5	b	163	181	Right-handed alpha
Helix 159	AR6	b	184	197	Right-handed alpha
Helix 160	AR7	b	203	215	Right-handed alpha
Helix 161	AR8	b	218	223	Right-handed alpha
Helix 162	AR9	b	225	233	Right-handed alpha
Helix 163	AS1	b	237	256	Right-handed alpha
Helix 164	AS2	b	294	305	Right-handed alpha
Helix 165	AS3	b	306	310	Right-handed 310
Helix 166	AS4	b	312	326	Right-handed alpha
Helix 167	AS5	b	331	333	Right-handed 310
Helix 168	AS6	b	334	342	Right-handed alpha
Helix 169	AS7	b	343	345	Right-handed 310
Helix 170	AS8	b	346	362	Right-handed alpha
Helix 171	AS9	b	365	376	Right-handed 310
Helix 172	AT1	b	382	397	Right-handed alpha
Helix 173	AT2	b	401	414	Right-handed alpha
Helix 174	AT3	b	417	435	Right-handed alpha
Helix 175	AT4	b	438	451	Right-handed alpha
Helix 176	AT5	b	454	472	Right-handed alpha
Helix 177	AT6	b	476	488	Right-handed alpha
Helix 178	AT7	b	492	506	Right-handed alpha
Helix 179	AT8	b	507	510	Right-handed 310
Helix 180	AT9	b	513	525	Right-handed alpha
Helix 181	AU1	b	526	528	Right-handed 310
Helix 182	AU2	b	529	564	Right-handed alpha
Helix 183	AU3	b	567	582	Right-handed alpha
Helix 184	AU4	b	588	593	Right-handed alpha
Helix 185	AU5	b	593	599	Right-handed alpha
Helix 186	AU6	b	609	615	Right-handed 310
Helix 187	AU7	b	621	627	Right-handed alpha
Helix 188	AU8	b	645	650	Right-handed 310
Helix 189	AU9	m	25	27	Right-handed 310
Helix 190	AV1	m	28	39	Right-handed alpha
Helix 191	AV2	m	41	45	Right-handed 310
Helix 192	AV3	m	75	95	Right-handed alpha
Helix 193	AV4	m	98	105	Right-handed alpha
Helix 194	AV5	m	105	116	Right-handed alpha
Helix 195	AV6	m	126	134	Right-handed alpha
Helix 196	AV7	m	138	149	Right-handed alpha
Helix 197	AV8	m	158	163	Right-handed alpha
Helix 198	AV9	m	224	226	Right-handed 310
Helix 199	AW1	m	238	246	Right-handed alpha
Helix 200	AW2	s	24	41	Right-handed alpha
Helix 201	AW3	s	82	102	Right-handed alpha
Helix 202	AW4	s	105	112	Right-handed alpha
Helix 203	AW5	s	112	123	Right-handed alpha
Helix 204	AW6	s	133	151	Right-handed alpha
Helix 205	AW7	a	29	40	Right-handed alpha
Helix 206	AW8	a	74	83	Right-handed 310
Helix 207	AW9	a	96	98	Right-handed 310
Helix 208	AX1	a	99	112	Right-handed alpha
Helix 209	AX2	a	135	144	Right-handed alpha
Helix 210	AX3	a	145	148	Right-handed 310
Helix 211	AX4	a	165	178	Right-handed alpha
Helix 212	AX5	c	4	12	Right-handed alpha
Helix 213	AX6	c	29	39	Right-handed alpha
Helix 214	AX7	c	71	82	Right-handed 310
Helix 215	AX8	c	99	112	Right-handed alpha
Helix 216	AX9	c	114	119	Right-handed 310
Helix 217	AY1	c	135	144	Right-handed alpha
Helix 218	AY2	c	165	178	Right-handed alpha

There are 21 sheets in PDB entry 9C59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	14	17	first strand
Strand 2	M	2	9	anti-parallel
Strand 3	M	64	70	anti-parallel
Strand 4	M	55	61	anti-parallel
Strand 5	M	48	50	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	118	first strand
Strand 2	M	121	122	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	228	229	first strand
Strand 2	M	258	264	anti-parallel
Strand 3	M	197	211	anti-parallel
Strand 4	M	178	191	anti-parallel
Strand 5	M	402	418	parallel
Strand 6	M	370	380	anti-parallel
Strand 7	M	306	313	anti-parallel
Strand 8	M	338	344	anti-parallel
Strand 9	M	329	333	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	228	229	first strand
Strand 2	M	258	264	anti-parallel
Strand 3	M	197	211	anti-parallel
Strand 4	M	178	191	anti-parallel
Strand 5	M	402	418	parallel
Strand 6	Y	415	416	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	248	250	first strand
Strand 2	M	217	222	anti-parallel
Strand 3	M	389	395	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	274	280	first strand
Strand 2	M	288	297	anti-parallel
Strand 3	M	353	360	anti-parallel
Strand 4	M	318	325	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	19	first strand
Strand 2	S	2	8	anti-parallel
Strand 3	S	71	77	anti-parallel
Strand 4	S	62	68	anti-parallel
Strand 5	S	49	51	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	124	125	first strand
Strand 2	S	128	129	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	58	first strand
Strand 2	A	61	68	anti-parallel
Strand 3	A	19	24	parallel
Strand 4	A	87	93	parallel
Strand 5	A	120	126	parallel
Strand 6	A	153	157	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	58	first strand
Strand 2	C	61	68	anti-parallel
Strand 3	C	19	24	parallel
Strand 4	C	87	91	parallel
Strand 5	C	120	125	parallel
Strand 6	C	153	157	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	c	42	44	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	14	17	first strand
Strand 2	m	2	9	anti-parallel
Strand 3	m	64	70	anti-parallel
Strand 4	m	55	61	anti-parallel
Strand 5	m	48	50	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	117	118	first strand
Strand 2	m	121	122	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	228	229	first strand
Strand 2	m	258	264	anti-parallel
Strand 3	m	197	211	anti-parallel
Strand 4	m	178	191	anti-parallel
Strand 5	m	402	418	parallel
Strand 6	m	370	380	anti-parallel
Strand 7	m	306	313	anti-parallel
Strand 8	m	338	344	anti-parallel
Strand 9	m	329	333	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	228	229	first strand
Strand 2	m	258	264	anti-parallel
Strand 3	m	197	211	anti-parallel
Strand 4	m	178	191	anti-parallel
Strand 5	m	402	418	parallel
Strand 6	y	415	416	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	248	250	first strand
Strand 2	m	217	222	anti-parallel
Strand 3	m	389	395	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	274	280	first strand
Strand 2	m	288	297	anti-parallel
Strand 3	m	353	360	anti-parallel
Strand 4	m	318	325	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	14	19	first strand
Strand 2	s	2	8	anti-parallel
Strand 3	s	71	77	anti-parallel
Strand 4	s	62	68	anti-parallel
Strand 5	s	49	51	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	124	125	first strand
Strand 2	s	128	129	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	51	58	first strand
Strand 2	a	61	68	anti-parallel
Strand 3	a	19	24	parallel
Strand 4	a	87	93	parallel
Strand 5	a	120	126	parallel
Strand 6	a	153	157	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	51	58	first strand
Strand 2	c	61	68	anti-parallel
Strand 3	c	19	24	parallel
Strand 4	c	87	91	parallel
Strand 5	c	120	125	parallel
Strand 6	c	153	157	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C59

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C59