Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C5A entry

There are 8 chains in PDB entry 9C5A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 40	ASN 650
M	MET 1	THR 418
C	GLY 2	LYS 181
Y	SER 410	ILE 417
b	ASP 40	ASN 650
m	MET 1	THR 418
c	GLY 2	LYS 181
y	SER 410	ILE 417

There are 96 helices in PDB entry 9C5A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	40	53	Right-handed alpha
Helix 2	AA2	B	55	72	Right-handed alpha
Helix 3	AA3	B	76	78	Right-handed 310
Helix 4	AA4	B	79	84	Right-handed alpha
Helix 5	AA5	B	85	89	Right-handed 310
Helix 6	AA6	B	91	106	Right-handed alpha
Helix 7	AA7	B	109	115	Right-handed alpha
Helix 8	AA8	B	117	124	Right-handed alpha
Helix 9	AA9	B	128	141	Right-handed alpha
Helix 10	AB1	B	144	146	Right-handed 310
Helix 11	AB2	B	147	160	Right-handed alpha
Helix 12	AB3	B	163	181	Right-handed alpha
Helix 13	AB4	B	184	197	Right-handed alpha
Helix 14	AB5	B	200	215	Right-handed alpha
Helix 15	AB6	B	218	224	Right-handed 310
Helix 16	AB7	B	225	233	Right-handed alpha
Helix 17	AB8	B	237	256	Right-handed alpha
Helix 18	AB9	B	296	305	Right-handed alpha
Helix 19	AC1	B	306	310	Right-handed 310
Helix 20	AC2	B	312	327	Right-handed alpha
Helix 21	AC3	B	328	334	Right-handed 310
Helix 22	AC4	B	335	343	Right-handed alpha
Helix 23	AC5	B	346	362	Right-handed alpha
Helix 24	AC6	B	363	376	Right-handed 310
Helix 25	AC7	B	382	397	Right-handed alpha
Helix 26	AC8	B	401	415	Right-handed alpha
Helix 27	AC9	B	417	427	Right-handed alpha
Helix 28	AD1	B	621	627	Right-handed alpha
Helix 29	AD2	B	645	649	Right-handed 310
Helix 30	AD3	M	25	27	Right-handed 310
Helix 31	AD4	M	28	38	Right-handed alpha
Helix 32	AD5	M	41	45	Right-handed 310
Helix 33	AD6	M	75	95	Right-handed alpha
Helix 34	AD7	M	98	116	Right-handed alpha
Helix 35	AD8	M	126	134	Right-handed alpha
Helix 36	AD9	M	138	149	Right-handed alpha
Helix 37	AE1	M	158	163	Right-handed 310
Helix 38	AE2	M	224	226	Right-handed 310
Helix 39	AE3	M	238	245	Right-handed alpha
Helix 40	AE4	C	3	13	Right-handed alpha
Helix 41	AE5	C	29	39	Right-handed alpha
Helix 42	AE6	C	74	82	Right-handed 310
Helix 43	AE7	C	96	98	Right-handed 310
Helix 44	AE8	C	99	112	Right-handed alpha
Helix 45	AE9	C	113	117	Right-handed 310
Helix 46	AF1	C	135	144	Right-handed alpha
Helix 47	AF2	C	145	148	Right-handed 310
Helix 48	AF3	C	165	178	Right-handed alpha
Helix 49	AF4	b	41	53	Right-handed alpha
Helix 50	AF5	b	55	72	Right-handed alpha
Helix 51	AF6	b	76	78	Right-handed 310
Helix 52	AF7	b	79	84	Right-handed alpha
Helix 53	AF8	b	85	89	Right-handed 310
Helix 54	AF9	b	91	106	Right-handed alpha
Helix 55	AG1	b	109	115	Right-handed alpha
Helix 56	AG2	b	117	124	Right-handed alpha
Helix 57	AG3	b	128	141	Right-handed alpha
Helix 58	AG4	b	144	146	Right-handed 310
Helix 59	AG5	b	147	160	Right-handed alpha
Helix 60	AG6	b	163	181	Right-handed alpha
Helix 61	AG7	b	184	197	Right-handed alpha
Helix 62	AG8	b	200	215	Right-handed alpha
Helix 63	AG9	b	218	224	Right-handed 310
Helix 64	AH1	b	225	233	Right-handed alpha
Helix 65	AH2	b	237	256	Right-handed alpha
Helix 66	AH3	b	296	305	Right-handed alpha
Helix 67	AH4	b	306	310	Right-handed 310
Helix 68	AH5	b	312	327	Right-handed alpha
Helix 69	AH6	b	328	334	Right-handed 310
Helix 70	AH7	b	335	343	Right-handed alpha
Helix 71	AH8	b	346	362	Right-handed alpha
Helix 72	AH9	b	363	376	Right-handed 310
Helix 73	AI1	b	382	397	Right-handed alpha
Helix 74	AI2	b	401	415	Right-handed alpha
Helix 75	AI3	b	417	427	Right-handed alpha
Helix 76	AI4	b	621	627	Right-handed alpha
Helix 77	AI5	b	645	649	Right-handed 310
Helix 78	AI6	m	25	27	Right-handed 310
Helix 79	AI7	m	28	38	Right-handed alpha
Helix 80	AI8	m	41	45	Right-handed 310
Helix 81	AI9	m	75	95	Right-handed alpha
Helix 82	AJ1	m	98	116	Right-handed alpha
Helix 83	AJ2	m	126	134	Right-handed alpha
Helix 84	AJ3	m	138	149	Right-handed alpha
Helix 85	AJ4	m	158	163	Right-handed 310
Helix 86	AJ5	m	224	226	Right-handed 310
Helix 87	AJ6	m	238	245	Right-handed alpha
Helix 88	AJ7	c	3	13	Right-handed alpha
Helix 89	AJ8	c	29	39	Right-handed alpha
Helix 90	AJ9	c	74	82	Right-handed 310
Helix 91	AK1	c	96	98	Right-handed 310
Helix 92	AK2	c	99	112	Right-handed alpha
Helix 93	AK3	c	113	117	Right-handed 310
Helix 94	AK4	c	135	144	Right-handed alpha
Helix 95	AK5	c	145	148	Right-handed 310
Helix 96	AK6	c	165	178	Right-handed alpha

There are 14 sheets in PDB entry 9C5A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	14	19	first strand
Strand 2	M	2	9	anti-parallel
Strand 3	M	64	70	anti-parallel
Strand 4	M	55	61	anti-parallel
Strand 5	M	48	50	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	118	first strand
Strand 2	M	121	122	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	228	233	first strand
Strand 2	M	255	264	anti-parallel
Strand 3	M	197	211	anti-parallel
Strand 4	M	178	191	anti-parallel
Strand 5	M	402	416	parallel
Strand 6	M	373	380	anti-parallel
Strand 7	M	305	313	anti-parallel
Strand 8	M	338	346	anti-parallel
Strand 9	M	329	333	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	228	233	first strand
Strand 2	M	255	264	anti-parallel
Strand 3	M	197	211	anti-parallel
Strand 4	M	178	191	anti-parallel
Strand 5	M	402	416	parallel
Strand 6	Y	415	416	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	248	250	first strand
Strand 2	M	218	222	anti-parallel
Strand 3	M	389	392	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	274	281	first strand
Strand 2	M	288	297	anti-parallel
Strand 3	M	353	360	anti-parallel
Strand 4	M	318	325	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	58	first strand
Strand 2	C	61	68	anti-parallel
Strand 3	C	16	24	parallel
Strand 4	C	87	93	parallel
Strand 5	C	120	126	parallel
Strand 6	C	153	157	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	14	19	first strand
Strand 2	m	2	9	anti-parallel
Strand 3	m	64	70	anti-parallel
Strand 4	m	55	61	anti-parallel
Strand 5	m	48	50	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	117	118	first strand
Strand 2	m	121	122	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	228	233	first strand
Strand 2	m	255	264	anti-parallel
Strand 3	m	197	211	anti-parallel
Strand 4	m	178	191	anti-parallel
Strand 5	m	402	416	parallel
Strand 6	m	373	380	anti-parallel
Strand 7	m	305	313	anti-parallel
Strand 8	m	338	346	anti-parallel
Strand 9	m	329	333	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	228	233	first strand
Strand 2	m	255	264	anti-parallel
Strand 3	m	197	211	anti-parallel
Strand 4	m	178	191	anti-parallel
Strand 5	m	402	416	parallel
Strand 6	y	415	416	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	248	250	first strand
Strand 2	m	218	222	anti-parallel
Strand 3	m	389	392	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	274	281	first strand
Strand 2	m	288	297	anti-parallel
Strand 3	m	353	360	anti-parallel
Strand 4	m	318	325	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	51	58	first strand
Strand 2	c	61	68	anti-parallel
Strand 3	c	16	24	parallel
Strand 4	c	87	93	parallel
Strand 5	c	120	126	parallel
Strand 6	c	153	157	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C5A

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5A