Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C5B entry

There are 7 chains in PDB entry 9C5B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 17	LYS 181
C	GLY 2	LYS 181
D	MET 1	ASN 605
M	MET 1	THR 418
S	MET 1	GLU 151
Y	SER 5	ILE 12
B	GLY 35	ASN 650

There are112 helices in PDB entry 9C5B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	40	Right-handed alpha
Helix 2	AA2	A	71	82	Right-handed 310
Helix 3	AA3	A	96	98	Right-handed 310
Helix 4	AA4	A	99	112	Right-handed alpha
Helix 5	AA5	A	113	117	Right-handed 310
Helix 6	AA6	A	135	144	Right-handed alpha
Helix 7	AA7	A	145	148	Right-handed 310
Helix 8	AA8	A	165	178	Right-handed alpha
Helix 9	AA9	C	4	14	Right-handed alpha
Helix 10	AB1	C	29	39	Right-handed alpha
Helix 11	AB2	C	74	82	Right-handed 310
Helix 12	AB3	C	99	112	Right-handed alpha
Helix 13	AB4	C	135	144	Right-handed alpha
Helix 14	AB5	C	145	148	Right-handed 310
Helix 15	AB6	C	165	177	Right-handed alpha
Helix 16	AB7	D	2	14	Right-handed alpha
Helix 17	AB8	D	17	28	Right-handed alpha
Helix 18	AB9	D	31	47	Right-handed alpha
Helix 19	AC1	D	51	68	Right-handed alpha
Helix 20	AC2	D	72	74	Right-handed 310
Helix 21	AC3	D	75	84	Right-handed alpha
Helix 22	AC4	D	87	102	Right-handed alpha
Helix 23	AC5	D	107	112	Right-handed alpha
Helix 24	AC6	D	112	122	Right-handed alpha
Helix 25	AC7	D	124	138	Right-handed alpha
Helix 26	AC8	D	140	155	Right-handed alpha
Helix 27	AC9	D	159	177	Right-handed alpha
Helix 28	AD1	D	177	192	Right-handed alpha
Helix 29	AD2	D	196	214	Right-handed alpha
Helix 30	AD3	D	215	218	Right-handed 310
Helix 31	AD4	D	221	232	Right-handed alpha
Helix 32	AD5	D	234	249	Right-handed alpha
Helix 33	AD6	D	252	270	Right-handed alpha
Helix 34	AD7	D	272	292	Right-handed alpha
Helix 35	AD8	D	296	314	Right-handed alpha
Helix 36	AD9	D	316	332	Right-handed alpha
Helix 37	AE1	D	334	339	Right-handed alpha
Helix 38	AE2	D	341	349	Right-handed alpha
Helix 39	AE3	D	353	368	Right-handed alpha
Helix 40	AE4	D	372	387	Right-handed alpha
Helix 41	AE5	D	389	410	Right-handed alpha
Helix 42	AE6	D	414	426	Right-handed alpha
Helix 43	AE7	D	433	448	Right-handed alpha
Helix 44	AE8	D	451	465	Right-handed alpha
Helix 45	AE9	D	465	470	Right-handed alpha
Helix 46	AF1	D	479	492	Right-handed alpha
Helix 47	AF2	D	493	496	Right-handed 310
Helix 48	AF3	D	498	507	Right-handed alpha
Helix 49	AF4	D	508	514	Right-handed 310
Helix 50	AF5	D	515	541	Right-handed alpha
Helix 51	AF6	D	542	555	Right-handed alpha
Helix 52	AF7	D	556	561	Right-handed alpha
Helix 53	AF8	D	565	588	Right-handed alpha
Helix 54	AF9	D	592	602	Right-handed alpha
Helix 55	AG1	M	25	27	Right-handed 310
Helix 56	AG2	M	28	39	Right-handed alpha
Helix 57	AG3	M	41	45	Right-handed 310
Helix 58	AG4	M	75	95	Right-handed alpha
Helix 59	AG5	M	98	105	Right-handed alpha
Helix 60	AG6	M	105	116	Right-handed alpha
Helix 61	AG7	M	126	134	Right-handed alpha
Helix 62	AG8	M	138	149	Right-handed alpha
Helix 63	AG9	M	158	163	Right-handed 310
Helix 64	AH1	M	224	228	Right-handed 310
Helix 65	AH2	M	238	245	Right-handed alpha
Helix 66	AH3	S	24	41	Right-handed alpha
Helix 67	AH4	S	82	102	Right-handed alpha
Helix 68	AH5	S	105	112	Right-handed alpha
Helix 69	AH6	S	112	123	Right-handed alpha
Helix 70	AH7	S	133	151	Right-handed alpha
Helix 71	AH8	B	39	53	Right-handed alpha
Helix 72	AH9	B	55	72	Right-handed alpha
Helix 73	AI1	B	76	78	Right-handed 310
Helix 74	AI2	B	79	84	Right-handed alpha
Helix 75	AI3	B	85	89	Right-handed 310
Helix 76	AI4	B	91	106	Right-handed alpha
Helix 77	AI5	B	109	114	Right-handed alpha
Helix 78	AI6	B	116	124	Right-handed alpha
Helix 79	AI7	B	128	142	Right-handed alpha
Helix 80	AI8	B	144	146	Right-handed 310
Helix 81	AI9	B	147	160	Right-handed alpha
Helix 82	AJ1	B	163	181	Right-handed alpha
Helix 83	AJ2	B	184	196	Right-handed alpha
Helix 84	AJ3	B	200	215	Right-handed alpha
Helix 85	AJ4	B	218	224	Right-handed 310
Helix 86	AJ5	B	225	233	Right-handed alpha
Helix 87	AJ6	B	234	236	Right-handed 310
Helix 88	AJ7	B	237	256	Right-handed alpha
Helix 89	AJ8	B	294	305	Right-handed alpha
Helix 90	AJ9	B	306	310	Right-handed 310
Helix 91	AK1	B	312	326	Right-handed alpha
Helix 92	AK2	B	331	333	Right-handed 310
Helix 93	AK3	B	334	343	Right-handed alpha
Helix 94	AK4	B	346	362	Right-handed alpha
Helix 95	AK5	B	364	376	Right-handed 310
Helix 96	AK6	B	382	397	Right-handed alpha
Helix 97	AK7	B	401	414	Right-handed alpha
Helix 98	AK8	B	417	435	Right-handed alpha
Helix 99	AK9	B	438	449	Right-handed alpha
Helix 100	AL1	B	450	452	Right-handed 310
Helix 101	AL2	B	454	472	Right-handed alpha
Helix 102	AL3	B	476	487	Right-handed alpha
Helix 103	AL4	B	492	506	Right-handed alpha
Helix 104	AL5	B	513	525	Right-handed alpha
Helix 105	AL6	B	526	528	Right-handed 310
Helix 106	AL7	B	529	565	Right-handed alpha
Helix 107	AL8	B	567	582	Right-handed alpha
Helix 108	AL9	B	590	592	Right-handed 310
Helix 109	AM1	B	593	599	Right-handed alpha
Helix 110	AM2	B	609	615	Right-handed 310
Helix 111	AM3	B	621	627	Right-handed alpha
Helix 112	AM4	B	645	650	Right-handed 310

There are 10 sheets in PDB entry 9C5B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	58	first strand
Strand 2	A	61	68	anti-parallel
Strand 3	A	18	23	parallel
Strand 4	A	87	93	parallel
Strand 5	A	120	126	parallel
Strand 6	A	153	157	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	58	first strand
Strand 2	C	61	68	anti-parallel
Strand 3	C	19	24	parallel
Strand 4	C	87	93	parallel
Strand 5	C	120	126	parallel
Strand 6	C	153	157	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	14	19	first strand
Strand 2	M	4	9	anti-parallel
Strand 3	M	64	70	anti-parallel
Strand 4	M	55	61	anti-parallel
Strand 5	M	48	50	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	118	first strand
Strand 2	M	121	122	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	229	233	first strand
Strand 2	M	255	264	anti-parallel
Strand 3	M	197	211	anti-parallel
Strand 4	M	178	191	anti-parallel
Strand 5	M	402	418	parallel
Strand 6	M	370	380	anti-parallel
Strand 7	M	306	313	anti-parallel
Strand 8	M	338	344	anti-parallel
Strand 9	M	329	333	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	229	233	first strand
Strand 2	M	255	264	anti-parallel
Strand 3	M	197	211	anti-parallel
Strand 4	M	178	191	anti-parallel
Strand 5	M	402	418	parallel
Strand 6	Y	10	11	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	248	250	first strand
Strand 2	M	217	222	anti-parallel
Strand 3	M	389	395	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	274	281	first strand
Strand 2	M	288	297	anti-parallel
Strand 3	M	353	360	anti-parallel
Strand 4	M	318	325	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	19	first strand
Strand 2	S	2	9	anti-parallel
Strand 3	S	71	77	anti-parallel
Strand 4	S	62	68	anti-parallel
Strand 5	S	49	51	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	124	125	first strand
Strand 2	S	128	129	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C5B

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5B