Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9C5C entry

There are 4 chains in PDB entry 9C5C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	LEU 18	ALA 601
B	LEU 47	ASN 650
M	MET 1	ALA 124
S	MET 1	GLU 151

There are 90 helices in PDB entry 9C5C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	18	28	Right-handed alpha
Helix 2	AA2	D	31	47	Right-handed alpha
Helix 3	AA3	D	51	69	Right-handed alpha
Helix 4	AA4	D	72	74	Right-handed 310
Helix 5	AA5	D	75	84	Right-handed alpha
Helix 6	AA6	D	87	100	Right-handed alpha
Helix 7	AA7	D	106	111	Right-handed 310
Helix 8	AA8	D	112	122	Right-handed alpha
Helix 9	AA9	D	124	136	Right-handed alpha
Helix 10	AB1	D	140	155	Right-handed alpha
Helix 11	AB2	D	159	177	Right-handed alpha
Helix 12	AB3	D	177	192	Right-handed alpha
Helix 13	AB4	D	196	212	Right-handed alpha
Helix 14	AB5	D	214	220	Right-handed 310
Helix 15	AB6	D	221	232	Right-handed alpha
Helix 16	AB7	D	234	249	Right-handed alpha
Helix 17	AB8	D	252	270	Right-handed alpha
Helix 18	AB9	D	272	291	Right-handed alpha
Helix 19	AC1	D	297	314	Right-handed alpha
Helix 20	AC2	D	316	334	Right-handed alpha
Helix 21	AC3	D	334	339	Right-handed alpha
Helix 22	AC4	D	342	349	Right-handed alpha
Helix 23	AC5	D	353	368	Right-handed alpha
Helix 24	AC6	D	372	387	Right-handed alpha
Helix 25	AC7	D	389	406	Right-handed alpha
Helix 26	AC8	D	414	427	Right-handed alpha
Helix 27	AC9	D	433	448	Right-handed alpha
Helix 28	AD1	D	451	465	Right-handed alpha
Helix 29	AD2	D	465	470	Right-handed alpha
Helix 30	AD3	D	477	492	Right-handed alpha
Helix 31	AD4	D	493	496	Right-handed 310
Helix 32	AD5	D	498	507	Right-handed alpha
Helix 33	AD6	D	508	514	Right-handed 310
Helix 34	AD7	D	515	541	Right-handed alpha
Helix 35	AD8	D	542	555	Right-handed alpha
Helix 36	AD9	D	557	562	Right-handed alpha
Helix 37	AE1	D	565	588	Right-handed alpha
Helix 38	AE2	D	592	600	Right-handed alpha
Helix 39	AE3	B	48	53	Right-handed alpha
Helix 40	AE4	B	55	73	Right-handed alpha
Helix 41	AE5	B	76	78	Right-handed 310
Helix 42	AE6	B	79	86	Right-handed alpha
Helix 43	AE7	B	91	106	Right-handed alpha
Helix 44	AE8	B	109	116	Right-handed alpha
Helix 45	AE9	B	116	124	Right-handed alpha
Helix 46	AF1	B	128	142	Right-handed alpha
Helix 47	AF2	B	147	161	Right-handed alpha
Helix 48	AF3	B	163	181	Right-handed alpha
Helix 49	AF4	B	184	197	Right-handed alpha
Helix 50	AF5	B	200	215	Right-handed alpha
Helix 51	AF6	B	219	225	Right-handed alpha
Helix 52	AF7	B	225	233	Right-handed alpha
Helix 53	AF8	B	237	256	Right-handed alpha
Helix 54	AF9	B	295	305	Right-handed alpha
Helix 55	AG1	B	306	310	Right-handed 310
Helix 56	AG2	B	312	327	Right-handed alpha
Helix 57	AG3	B	331	333	Right-handed 310
Helix 58	AG4	B	334	342	Right-handed alpha
Helix 59	AG5	B	343	345	Right-handed 310
Helix 60	AG6	B	346	364	Right-handed alpha
Helix 61	AG7	B	372	376	Right-handed 310
Helix 62	AG8	B	382	396	Right-handed alpha
Helix 63	AG9	B	401	414	Right-handed alpha
Helix 64	AH1	B	417	435	Right-handed alpha
Helix 65	AH2	B	438	448	Right-handed alpha
Helix 66	AH3	B	449	452	Right-handed 310
Helix 67	AH4	B	454	472	Right-handed alpha
Helix 68	AH5	B	476	487	Right-handed alpha
Helix 69	AH6	B	488	490	Right-handed 310
Helix 70	AH7	B	492	506	Right-handed alpha
Helix 71	AH8	B	513	525	Right-handed alpha
Helix 72	AH9	B	526	528	Right-handed 310
Helix 73	AI1	B	529	564	Right-handed alpha
Helix 74	AI2	B	567	582	Right-handed alpha
Helix 75	AI3	B	583	587	Right-handed 310
Helix 76	AI4	B	588	593	Right-handed alpha
Helix 77	AI5	B	593	599	Right-handed alpha
Helix 78	AI6	B	611	617	Right-handed 310
Helix 79	AI7	B	621	627	Right-handed alpha
Helix 80	AI8	B	645	650	Right-handed alpha
Helix 81	AI9	M	25	28	Right-handed 310
Helix 82	AJ1	M	29	39	Right-handed alpha
Helix 83	AJ2	M	75	95	Right-handed alpha
Helix 84	AJ3	M	98	105	Right-handed alpha
Helix 85	AJ4	M	105	116	Right-handed alpha
Helix 86	AJ5	S	24	41	Right-handed alpha
Helix 87	AJ6	S	82	101	Right-handed alpha
Helix 88	AJ7	S	105	112	Right-handed alpha
Helix 89	AJ8	S	112	123	Right-handed alpha
Helix 90	AJ9	S	133	151	Right-handed alpha

There are 4 sheets in PDB entry 9C5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	14	19	first strand
Strand 2	M	2	8	anti-parallel
Strand 3	M	64	70	anti-parallel
Strand 4	M	55	61	anti-parallel
Strand 5	M	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	118	first strand
Strand 2	M	121	122	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	19	first strand
Strand 2	S	2	9	anti-parallel
Strand 3	S	71	78	anti-parallel
Strand 4	S	61	68	anti-parallel
Strand 5	S	49	51	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	124	125	first strand
Strand 2	S	128	129	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9C5C

Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5C