Analysis of interatomic Contacts of Structural Units in PDB entry:
9C5G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9C5G entry

There are 4 chains in PDB entry 9C5G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 9LYS 296
B
 PRO 7LYS 296
C
 T 1 T 3
D
 T 1 T 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9C5G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 24Right-handed alpha
Helix 2
AA2
A
28 37Right-handed alpha
Helix 3
AA3
A
39 55Right-handed alpha
Helix 4
AA4
A
81 94Right-handed alpha
Helix 5
AA5
A
98 102Right-handed 310
Helix 6
AA6
A
121 135Right-handed alpha
Helix 7
AA7
A
197 200Right-handed 310
Helix 8
AA8
A
201 206Right-handed alpha
Helix 9
AA9
A
219 230Right-handed alpha
Helix 10
AB1
A
243 253Right-handed alpha
Helix 11
AB2
A
261 266Right-handed alpha
Helix 12
AB3
A
271 295Right-handed alpha
Helix 13
AB4
B
8 24Right-handed alpha
Helix 14
AB5
B
28 37Right-handed alpha
Helix 15
AB6
B
39 55Right-handed alpha
Helix 16
AB7
B
81 94Right-handed alpha
Helix 17
AB8
B
98 102Right-handed 310
Helix 18
AB9
B
121 135Right-handed alpha
Helix 19
AC1
B
197 200Right-handed 310
Helix 20
AC2
B
201 206Right-handed alpha
Helix 21
AC3
B
219 230Right-handed alpha
Helix 22
AC4
B
243 253Right-handed alpha
Helix 23
AC5
B
261 266Right-handed alpha
Helix 24
AC6
B
271 295Right-handed alpha
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There are 8 sheets in PDB entry 9C5G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
66 69anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
B
148 160parallel
Strand 3
B
165 171anti-parallel
Strand 4
B
176 181anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
B
148 160parallel
Strand 3
B
136 143anti-parallel
Strand 4
B
185 193anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 181first strand
Strand 2
A
165 171anti-parallel
Strand 3
A
148 160anti-parallel
Strand 4
A
138 143anti-parallel
Strand 5
A
185 190anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 181first strand
Strand 2
A
165 171anti-parallel
Strand 3
A
148 160anti-parallel
Strand 4
B
110 112parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 242first strand
Strand 2
A
207 214anti-parallel
Strand 3
A
267 269anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
66 68anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 242first strand
Strand 2
B
207 214anti-parallel
Strand 3
B
267 269anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il